Raphanus sativus (radish): 108854541
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Entry
108854541 CDS
T06014
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108854541
03041 Spliceosome [BR:
rsz03041
]
108854541
03036 Chromosome and associated proteins [BR:
rsz03036
]
108854541
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108854541
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108854541
mRNA cycle factors
Common to processing body (P body) and stress granule
108854541
Spliceosome [BR:
rsz03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
108854541
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
108854541
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
108854541
NCBI-ProteinID:
XP_018483636
UniProt:
A0A6J0NHP2
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Position
4:42074933..42078114
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AA seq
622 aa
AA seq
DB search
MSASWADVADSENNNTASSGSTKPSRPAYVPPHLRNKQPSSSSSDPVPAPSPANDRAGGY
NGPPSASRWAPSGSGGGYRADAGRPRGTAGGGGWNNRSGGWDNRREREVNPFENADADPE
PAFTEQDGATGINFDAYEDIPVETSGDNVPPGVNTFAEIDLGEALNLNIKRCKYVKPTPV
QRHAIPILLAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVVQRPRGSRTVYPLAVILS
PTRELASQIHDEAKKFAYQTGVKVVVAYGGTPINLQLRELERGVDILVATPGRLNDLLER
ARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEEMDMPPRGVRQTLLFSATFPREIQRLA
ADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGTHGKQALTLVF
VETKRGADSLENWLCINGFPATSIHGDRSQQEREVALKSFKSGRTPILVATDVAARGLDI
PHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTSMARSLSELMQEANQEV
PAWLSRYASRSSFGGGKNKRSGGRFGGRDFRREGGYGGGYSRGGGGGGGGGSNYYGGGGG
GYGGGYGAPSGGYGGETPSAWD
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcatcatgggctgatgtggctgactcagagaacaacaacactgcctcctctggg
tctactaaaccttcacgacctgcttacgttcctccacatctaaggaacaagcaaccatct
tcctccagttccgaccctgttcctgctccctcaccagctaatgatcgtgccggtggctat
aacggtccaccttctgcctctcgttgggctcctagtggtagtggtggtggttacagggct
gatgcaggccgtccaagaggaactgctggtggtggtggctggaacaacaggagtggaggg
tgggacaaccgtagggagcgtgaagtcaacccctttgagaacgctgacgccgaccccgag
cctgcgtttaccgagcaggacggtgccacggggatcaacttcgatgcgtatgaagatatc
ccggttgagactagcggtgataacgtgcctcctggtgtcaacacgttcgcggagattgat
ctaggggaggctctgaacctgaacatcaagaggtgcaagtacgtgaagccgacgcccgtg
cagaggcacgcgattcctatattgcttgccgggagggatctgatggcgtgtgctcagacg
gggtctgggaagacggctgcgttttgttttccgataattagtgggattatgaaggatcag
catgtagtgcagaggccacgtggctcgaggacggtttatcctcttgcggttattctctcg
ccgacgagggagttggctagtcagatacatgatgaggctaagaagttcgcttaccaaact
ggtgtgaaggttgttgttgcttatggaggaacacctattaacctgcagctacgggaacta
gagaggggagtcgatatactagtggcaactcctggtcgactaaatgatttgctggaaaga
gctagagtctctatgcagatgattaggtttttagctcttgatgaggccgataggatgctg
gacatgggttttgagccacagatcagaaagattgtcgaggaaatggacatgcctccgcgt
ggtgttagacagacgctgttgttcagtgctacttttccaagagagattcagagactcgca
gccgacttcctagcaaactatatatttttggctgtgggtagagtaggttcaagtaccgac
ttaattgtccaaagggttgagtttgtacttgattctgacaagagaagtcatctcatggac
ctgcttcatgctcagagagagaatggcacccatggcaagcaagccctgaccttagtgttt
gttgagacaaagagaggagccgactctctggaaaattggctgtgcatcaatgggtttcca
gcaacctccattcacggtgacagatcacagcaggaaagagaagtggcactgaagtccttc
aagagcgggagaacaccgattctggtggcaacagacgtagcagcgcgtggtctcgacatt
ccccacgtggctcacgttgtgaacttcgatctaccaaacgacatcgatgactacgtccac
cgtattggacgaacaggacgtgctggcaaatcaggactagcgaccgccttcttcaacgac
ggcaacacatcgatggcaagatccctctctgagctgatgcaagaagctaaccaggaagtc
cccgcgtggctctcacggtatgcttcgcgttcctcctttggtggtggtaagaacaagcgg
tctggtggtcggtttggtggccgtgactttagaagggaaggaggctatggcggtggatac
agtagaggaggaggaggcggtggtggtggtggtagcaattactatggtggtggaggagga
ggctatggcggtggatacggagctccaagtggtggatatggcggtgaaactccaagtgct
tgggactaa
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