Raphanus sativus (radish): 108854547 Help Entry 108854547         CDS       T06014                                  Name (RefSeq) vacuolar sorting protein 39   KO K20183   Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39 Organism rsz  Raphanus sativus (radish) Pathway rsz04148   Efferocytosis Brite KEGG Orthology (KO) [BR:rsz00001]  09140 Cellular Processes   09141 Transport and catabolism    04148 Efferocytosis     108854547  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:rsz04131]     108854547 Membrane trafficking [BR:rsz04131]  Endosome - Lysosome transport   Tethering complex    Hops complex     108854547 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Vps39_1 CNH zf-Vps39_C Clathrin zf-HC5HC2H AlaDh_PNT_N GET4 zf-HC5HC2H_2 Motif Other DBs NCBI-GeneID:  108854547 NCBI-ProteinID:  XP_018483641 UniProt:  A0A6J0NHP6 LinkDB All DBs Position 4:822000..826218 Genome browser AA seq 1001 aa AA seqDB search MVHNAYDSFQLLTNCPARIDAVESYNSKLFAGCYDGSLRIYSPQSPSSSSELRQDSYVLE TTVSGFSKKPIVAMKVLASRELLLSLSESIAFHKLPNLETVAVITKAKGANAYSWDDRRG FLCFSRQKRVCIFKHDGGGGFVEVRDFGVPDTVKSISWCGENICLGIRKEYVILNTANGT LSEVFPSGRVAPPLVTSLPSGELLLGKDNIGVFVDQNGKLLQTERLCWSEAPTAIVIQNP YAIALLPRRVEVRLLRSPYPLIQTVVLQNIRHLVKSNNAVIVGLDSSVHALFPVSIGAQI VQLTASGNFEEALALCKLLPPEESSIRAAKESSIHTRFAHYLFENGSYEEAMEHFLASQV DITHVLSMYPSIILPKTTMIPPPDKMVDISGDETSLSRGSSGFSDDMETSSPRYFMESEG NAALESKKMSHNTLMALIKYLQKKRPGIIEKATSEGTEEVISDAVGKTYGAYDSSKTKKS NKGRGTISLNSGAREMAAILDTALLQALLHTGQSGAAVELLKGVNYCDVKICEEILMKSK SYSALLELFKSNSMHHEALKLLNQLSEESKSNQSQTEMKQIFSPELIIEYLKPLCRTDPM LVLEYSMLVLESCPTQTIDLFLSGNISADLVNSYLKQHAPYMQGRYLELMMAMNETAVSG NLQNEMVQIYLSEVLDLHAALSAQQKWDDKDHPPERKKLLSALENISGYNPQTLLKRLPR DALYEERAVILGKMNQHELALSIYVHKLNAPDLALAYCDRIYESVSFLPSGKPASNIYLT LLQIYLNPKKSAKDFAKRIVALGSFESSDTTKMMESVLSSKVKGGSRSKKVVAIEGAEDM LRAGLSSSTDSGRSDVDAEVEPMEEGNSTVMISEVLDLLSQRWERINGAQALKLLPRETK LQNLLPFLAPLLRNSSEAHRNYSVIKSLRQSENLQVKEELYKHRKGVVQVTSDSMCSLCN KKIGASVFAVYPNGKTLVHFVCFKDSQGMKAVSKTSHGRRR NT seq 3006 nt NT seq  +upstreamnt  +downstreamnt atggttcacaacgcctacgactccttccagctcctcaccaactgccccgcccggatcgac gccgtcgaatcctacaactccaagctcttcgccggatgctacgacggctccctccgcatc tactctccccaatctccctcctcctcctctgagctccgccaagactcttacgtcctcgag acgaccgtctccggattctccaagaaaccaatcgtggcgatgaaggtcttagcttccaga gagctgctcctctctctctcggagtcgatcgcctttcacaagcttcctaatctggagacc gtcgctgtcatcaccaaagctaaaggcgccaatgcttactcttgggacgatcgacgtggc ttcctctgcttctctaggcagaagagagtctgcatcttcaagcacgacggaggaggaggg tttgtggaagtgagagactttggagttcctgatactgtaaagtccatttcttggtgcggt gagaacatttgcttagggattaggaaagagtatgtgattctcaacactgctaatgggact ctctctgaggtgtttccttctggtagagttgctcctcctctcgtcacttctctaccttct ggtgaacttctcttggggaaggataacattggagtttttgttgatcaaaacgggaagcta cttcagactgagaggctttgctggtcagaggctccaacagctatagtcattcagaaccct tatgcaatagccttgttacctcgacgagttgaggttcgcttgctgcgaagcccttatcct ttgatacagacagttgttctccagaatattcgtcaccttgtcaagagcaacaatgctgtg attgttggtttggatagctctgttcatgctctcttccctgtttctatcggtgctcagatt gtacagttaacagcttctggaaactttgaggaagccttagctctatgcaagttactcccc cctgaagagtcaagcataagagctgcgaaagagagttcgattcatacaagatttgctcat tatctttttgaaaacgggagctatgaggaagccatggaacactttctggcgtctcaagta gatataacgcatgtgctttccatgtatccgtccatcattcttcctaaaacaacaatgatt cctccaccagataagatggtggacatctctggggatgaaacatctctgtcacgaggctca tccggattttctgatgatatggagacttcatctcctcgttattttatggaatctgaaggc aatgcagcccttgagtctaaaaaaatgagccacaacactctgatggctctgataaagtac ttgcagaagaagagaccaggcattatcgagaaggccacttctgaaggaacagaagaggtc atttctgatgccgttggcaaaacttacggagcctatgactcttccaagactaagaagtcc aacaagggacgtggtacgatctcgcttaattcaggtgcgagggagatggcagcaattctt gatacagctcttctccaagcacttctacacactggccagtctggagctgctgtagaatta ttaaagggtgtcaactactgtgacgtaaagatttgtgaggagattctaatgaaaagcaaa agttattctgctctattagaattgttcaagagcaattcgatgcaccatgaagcccttaag cttcttaatcagctctcggaagagtccaaatcaaaccagtctcaaactgaaatgaagcag atctttagtcctgagttgatcattgaatatctcaagcctctctgcaggactgatcctatg ctcgtcttggagtactctatgcttgtcctggagagctgtccaacacaaaccatcgacctg tttttgtcgggaaacatctcggctgaccttgtcaattcgtatctgaagcagcatgctcca tacatgcagggtagatatctggaacttatgatggcaatgaacgaaaccgcagtttctggg aatctccaaaacgagatggtacaaatctacctttcagaagtgcttgacttgcatgctgca ttaagcgcgcagcagaaatgggacgacaaggatcatcctcctgaaaggaaaaagctattg tctgcattagagaacatctccggatataatccacagactttgttgaagcgtcttccacgc gatgctctctatgaagagcgtgctgttatattgggtaaaatgaatcaacacgagcttgct ttgtctatctatgttcataagcttaatgcacctgatctggcgctggcttactgtgatcgt atatatgagtccgtatcttttctaccatctggaaaaccggcaagcaacatctacctcacg ctgctgcaaatctacctgaatcctaagaaaagtgcaaaggactttgcgaaacgtattgta gctctaggatcattcgagagttcagataccacgaagatgatggagtctgttttgtcttca aaagtcaaaggaggcagcaggtccaagaaagttgttgcgatagaaggcgctgaggatatg ctgagagctggtctcagtagcagcactgacagcggaagaagcgacgttgatgctgaagta gagcccatggaagaaggaaactccaccgttatgatttctgaagttcttgatctgttgagt caaaggtgggagaggatcaatggtgcacaagccctcaagcttttgcctagagaaactaaa ctccagaacctgctcccgtttcttgcaccccttcttagaaactcaagtgaagcacacagg aactattcagtcatcaagagtttgaggcagagcgaaaacttacaggtgaaggaggaactg tacaaacataggaaaggagtggtgcaagtaacaagcgatagcatgtgttcgttgtgcaac aagaagattggggcaagcgtgtttgctgtttatcccaacgggaaaacgttagttcacttt gtctgcttcaaagattctcaaggcatgaaagctgtttctaagacatctcatggaagaaga cgatga

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