Raphanus sativus (radish): 108854714
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Entry
108854714 CDS
T06014
Name
(RefSeq) DNA-directed RNA polymerase II subunit 2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03020
RNA polymerase
rsz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108854714
09124 Replication and repair
03420 Nucleotide excision repair
108854714
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
108854714
03400 DNA repair and recombination proteins [BR:
rsz03400
]
108854714
Enzymes [BR:
rsz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108854714
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
108854714
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
108854714
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
108854714
NCBI-ProteinID:
XP_018483839
UniProt:
A0A6J0NH38
A0A9W3CKQ2
LinkDB
All DBs
Position
4:6022521..6029088
Genome browser
AA seq
1192 aa
AA seq
DB search
MEYNNNEYEEQDPTTYIEEDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQ
EIVDESSDIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAAR
LRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKD
LTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAENQN
RPPSTMFVRMLARASAKGGSSGQYIRCTLPYIKVEIPIIIVFRALGFVADKDILEHICYD
FADNQMMELLRPSLEEAFVIQNQLVALDYIGKRGAPLGTPKEKRIKYARDILQREMLPHV
GVGEFCETKKAYYFGYIVHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKL
TRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNR
LTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI
TVGSAAYPILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTLRRLRR
RVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDNQRLLIKKKDIYALQQRESAEEDG
WHHLVAKGFIEYIDTEEEETTMISMTINDLVQARLRPDEAYSETYTHCEIHPSLILGVCA
SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH
FRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED
FGRPDRASTMGMRHGSYEKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSSRYTRR
DHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT
QEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI
SKALHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILT
RQPAEGRSRDGGLRFGEMERDCMIAHGAANFLKERLFDQSDAYRVHVCETCGLIAIANLK
KNSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKGLKSAKGRK
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atggagtataataacaacgaatacgaagaacaggatccgacgacttacatcgaggaagac
gacgatgaggagatcacccaggaagacgcgtgggcggttatctctgcgtatttcgaggag
aaaggtctcgttcgtcagcagctcgattccttcgacgagtttatccagaacactatgcaa
gagatcgtcgatgagtcctctgatatcgagatccgtcctgagtctcagcacaatcctggc
caacaatctgatttcgccgagacaatctacaagattagttttggacagatttatctgagt
aaacccatgatgacggaatctgatggagagactgccaccttgttccctaaggctgcaagg
ttgagaaacctcacctactcggctcctctctatgtcgatgttagtaagagagttataaag
aaagggcatgatggtgaggaagttacagagacacaggatttcaccaaagttttcattggg
aaggttcccatcatgctgcggtctagttactgtaccttgtttcagaactctgagaaagat
ttgacagagcttggagaatgtccttatgatcagggcggatactttattattaatggcagt
gaaaaggttctgattgctcaggagaagatgagtacgaaccatgtttatgttttcaagaag
cgacagccaaataagtatgcatatgttggtgaagtccgttccatggctgagaaccaaaat
aggcctcccagcacaatgtttgtgcgtatgcttgctcgtgctagtgcgaaagggggttca
tctggccagtatatccggtgtactctaccatacattaaagtggaaattcctattataata
gtgtttcgcgccttgggatttgttgctgataaggacatattggaacatatttgctatgat
tttgccgacaatcagatgatggagttgctcaggccttccttggaagaagctttcgttatt
caaaatcagctggttgcacttgactatattgggaaacgtggtgcacccttgggcaccccc
aaggaaaagaggataaagtatgcaagagatatccttcagagagaaatgcttcctcatgta
ggagttggggagttttgtgagacgaagaaagcttactattttgggtatatcgtacaccgg
ctgctgctttgtgcacttggccgaaggccagaagatgatagggatcattatggtaacaaa
aggctggatcttgctggtcctttacttggaggactctttagaatgcttttcagaaagcta
acgagggatgtgagatcttatgttcagaagtgtgttgacaatggcaaagaagtcaatctt
caatttgccattaaggctaaaacaattacctctggcctgaaatattctcttgctactgga
aactggggccaggcaaacgctgctggtacaagagctggagtgtctcaggttttaaatcgg
ttaacatatgcttccactttgtcacatttgaggcgtctcaattctcctattgggcgtgaa
ggaaaattggcgaaaccaagacaactgcacaactcacagtggggtatgatgtgccctgct
gaaacacctgaaggacaggcttgtggcttagtgaaaaacttggcgctcatggtctacatt
acagttgggtcagctgcttatcccatcttggaattcttggaagaatgggggactgagaat
tttgaggaaatctctccatcagttataccccaagccacaaaaatctttgtcaatggaatg
tgggttggagttcatcgagatcctgacatgttggtgaaaactttgagacgtttgagaaga
agggttgatgttaacactgaagttggcgttgttagagatattcgtctgaaagagctccgg
atatacactgattatggtcgttgtagtcgtcccttgtttattgtggataaccagaggctg
ttaataaagaagaaagatatctatgctctgcaacaaagggaaagtgcagaagaagatggt
tggcatcatctagttgcaaaggggtttatagaatacattgacacagaggaagaggagact
actatgatatccatgactattaatgatctggttcaagctagactccgtcccgatgaggca
tattctgaaacttacacacattgtgagattcacccttctttgatattgggcgtttgtgct
tcgattataccatttcccgaccataatcagtcaccccgtaatacatatcaatctgctatg
ggaaagcaagcgatgggaatatatgtcaccaattaccaatttcgcatggataccttagca
tatgtcctctattaccctcaaaagcctctggtcaccacaagagctatggagcatcttcac
tttaggcaacttccagcaggaattaatgctattgttgccatttcttgctattctggatat
aatcaggaagattctgtcatcatgaatcagtcttcaatagatcgtggtttctttagatcc
ttgttctttcggtcttacagagatgaagagaaaaaaatggggacgcttgtcaaagaagac
tttgggcgccctgacagggcaagtacaatgggtatgcgacatggttcgtatgagaagctg
gacgatgatggtcttgcacctcctggtactagagtttcaggtgaagatgtaatcattggg
aaaaccactccaatatctcaagacgaggctcaaggtcaatcatcgcgatatactagacgt
gatcacagtataagcttgcgacatagtgaaaccggaatggtggatcaggtgttattgacc
acaaatgcagatggcttaaggttcgtgaaagtgagggttagatccgttcgtatacctcag
attggagacaaatttagtagtagacatggtcagaaaggaaccgttggcatgacgtacaca
caggaggacatgccttggacaattgaaggagtaactcctgatatcatcgtgaacccgcat
gctattccgtctcggatgacaattggtcagcttatcgagtgcatcatggggaaagtggca
gcgcacatgggaaaagaaggagatgcgactccttttacagatgtcacggtggataacata
agcaaagcgctccataagtgtggctaccaaatgcgtggctttgagaggatgtacaatggg
cacacgggcagaccactcacagctatgatattccttggaccaacatactaccagaggttg
aagcatatggttgatgacaagattcactcgcgtggacgaggtcctgtgcagatcttaaca
agacagccagctgaagggcggtctcgggatggtggtctgcgatttggagaaatggagcgt
gattgcatgattgcgcatggtgctgcaaatttcttgaaggagagactgttcgatcagagc
gatgcgtatagggtgcatgtgtgtgaaacctgtgggctcattgccattgcaaacctgaag
aagaattcttttgaatgcagaggctgcaagaacaaaacagatattgttcaggttcacatt
ccatatgcttgcaagctgctttttcaagagcttatgtcgatggcgattgctccaaggatg
cttaccaaagggcttaaatcagctaaaggcagaaagtga
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