Raphanus sativus (radish): 108854741
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Entry
108854741 CDS
T06014
Name
(RefSeq) pre-mRNA splicing factor SR-like 1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108854741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsz03041
]
108854741
Spliceosome [BR:
rsz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
108854741
Complex C
U4/U6.U5 tri-SnRNP related factors
108854741
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Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
108854741
NCBI-ProteinID:
XP_056864454
UniProt:
A0A9W3DKW3
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Position
4:complement(28247724..28250898)
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AA seq
388 aa
AA seq
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MAEIQTNGRSYESLLEKVLSMNIVSSDYFKELYGLKTYHEVVDEIYNQVSHVEPWMGGNC
RGPSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTLWTWYEPYI
KDDEEFAPGSNGRVTTMGVYVRDLLLGLYYFDTLFPRIPVPVMRQIVSNLEKMNLPTKPS
GSTGDMSRGSEDTARRPPSVKASLSVSFGQRAPHRASTRGSSPVRRPPPSGYDRNERDEP
QRRSPRRSQSRDYYSDRDSDRQRERERERERDRYRERERDYGNDRRSRRDYESSRSRRGD
YEDDRSRHDRRSRSRSRSRSRSVQIEREPTPKRDYGNKEKAAVTVNSNLAKLKDLYGDAS
NQKGEEGYGTRRDSSSEEVIKLGGSSWR
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atggcggagatacaaacaaatgggagatcgtacgagtcactgttggagaaggttctttca
atgaacattgtttcttctgactatttcaaagagctttatggtctcaagacttatcatgag
gtcgttgatgaaatctacaaccaagttagtcatgtcgagccctggatgggtggcaactgc
cgtggtccttccactgcctattgtctcctctacaaattcttcaccatgaaactcactgtc
aagcagatgcatggcctcttgaagcacactgattctccttacatcagagcggtcggattc
ctatatttaagatatgttgcagatgcaaagacgttgtggacatggtacgaaccatacatt
aaagatgatgaggagtttgcaccaggatcaaatggacgggtgacgaccatgggtgtttac
gtacgtgatttgctgcttggactgtattactttgatacattgtttccacgtatcccggta
cctgtgatgcgccagattgtatcaaaccttgagaagatgaatttaccaacaaaaccatct
ggttcaacgggagacatgtctcgtggctctgaagacactgcgcgtcgtccaccgtcagta
aaagcatccctctctgtttcatttgggcagcgtgcacctcaccgtgcctccaccagaggc
tcctctcccgttcgccgtcctccaccttcaggttatgacagaaacgaaagggatgaacca
cagcgtcggtccccacggaggagccagagccgagactattattcggacagagactcagat
agacagcgggagagagagagggagagggaaagagatagatacagagaaagggagagggat
tatggtaatgataggagatcaaggcgtgactatgaaagtagtagaagcagacgcggtgac
tacgaggatgatagaagcagacacgaccgtagaagcaggagcaggagcaggagtaggagc
aggagtgtgcaaattgagcgtgaaccaactcctaaaagagactatggaaacaaggagaaa
gcagctgtgactgttaacagcaacctcgcaaagctaaaagatctatatggagacgcgagt
aatcagaaaggggaagaagggtatggaacaaggagggattcaagttcagaagaagtgatt
aagcttggtggttcctcttggaggtga
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