Raphanus sativus (radish): 108854839
Help
Entry
108854839 CDS
T06014
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1
KO
K14485
transport inhibitor response 1
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
108854839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rsz04121
]
108854839
Ubiquitin system [BR:
rsz04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
108854839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
F-box-like
F-box
LRR_NXF1-5
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
108854839
NCBI-ProteinID:
XP_018484009
UniProt:
A0A6J0NHK0
LinkDB
All DBs
Position
4:50287620..50290709
Genome browser
AA seq
597 aa
AA seq
DB search
MYKRVYLSFPEEVLEHVFSFIHLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPAT
VISRFPKLRSVELKGKPHFADFNLVPEGWGGYVYPWIEAMSRSYTWLEEIRLKRMVVSDE
CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP
DSYTSLVSLNISCLSSEVSFSALERLVSRCPNLKSLKLNRAVPLEKLATLLQRAPQLEEF
GTGGYTADVRPDVFSDLSVAFSACKNLKSLSGFWDAAPAYLPAVYSVCTRVTTLNLSYAT
VQSYDLVKLLSQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSDPFVMEANVALT
EQGLVSVSLGCPKLESVLYFCRQMTNDALVTIARNRPNMTRFRLCIIEPKAPDHMTLEPL
DVGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGESDLGMHHVLSGC
DSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDE
RGPPDSRPESCPVERVFIYRTVAGPRFDMPGFVWNMDQQHSTMRFAREMISTTTNEF
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgtataagcgagtgtacttgtcgtttccagaagaagtcctcgagcacgtcttctcgttc
atacatctggacaaggacagaaactctgtatctctcgtgtgcaagtcgtggtacgagatc
gagcggtggtgcaggaggaaagtcttcatcgggaactgctacgccgtgagccccgcgacg
gttataagccggttcccgaagctgagatccgtggagctcaaggggaaaccgcacttcgca
gatttcaatctggttcccgaagggtggggcggttacgtgtatccgtggatagaggcgatg
tcgaggtcgtacacgtggctggaggagataaggctgaagaggatggtggtgagcgacgag
tgcttggagctcattgctaagtcgtttaagaatttcaaggttctggtgctttcttcctgc
gaaggcttctccaccgatggtctcgctgctatcgccgccacttgcaggaatctgaaagag
cttgatttgcgtgagagtgatgttgacgatgttagtggccactggcttagtcatttccct
gattcatacacttctttggtttcactcaatatctcttgcttatcctctgaggtcagtttc
tctgctctggagaggctggtgagtcggtgtccgaatctcaagtccctcaagcttaaccga
gctgttcctcttgagaaactggctactctacttcaaagagcgcctcagcttgaggaattt
ggtacgggtggctacactgctgacgtgcgtccagatgtcttctctgatttgtctgtagct
ttctctgcctgcaagaatttgaagtccttgtctgggttttgggatgctgctcctgcctat
ctccctgctgtttattccgtttgcactcgggttactactttgaacctcagttatgcgact
gtccagagctatgatcttgtcaagcttcttagccaatgtcctaaactgcagcgcctctgg
gtgttggactacatcgaggacgctggtcttgaggtgcttgcttccacctgcaaggacctt
cgcgagctgagagtgtttccctctgacccttttgtcatggaggcaaacgttgcattgacg
gaacaagggcttgtctcggtctccttaggctgtccaaagctcgagtccgttctctacttc
tgccgtcaaatgaccaatgatgcgttggttaccattgctaggaaccgtcccaacatgact
cgcttccgtttgtgcatcattgagccgaaagcccctgaccatatgactctagagccactg
gatgttggatttggagccattgtagagcactgcaaagacctccggcggctctccctatca
gggctcttgaccgacaaggtttttgaatacattgggacatatgcaaagaagatggagatg
ctgtcggtggcatttgcaggagagagcgacttggggatgcatcatgttttgtcagggtgc
gatagtttgaggaagctagagataagggactgcccgtttggagacaaggcgctgttggcc
aatgcttcgaagctggagacaatgcgatccctttggatgtcttcttgttcggtgagtttt
ggagcctgcaagttattaggacagaagatgccaaagctcaatgtggaagtcatcgatgaa
aggggtccaccggactcgagaccggagagctgccctgttgagagagtgttcatataccga
acagtggcgggtcctcggtttgacatgcccggcttcgtctggaacatggaccaacaacac
tcgaccatgaggtttgccagggaaatgatctctactactactaacgagttttaa
DBGET
integrated database retrieval system
