Raphanus sativus (radish): 108854865
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Entry
108854865 CDS
T06014
Name
(RefSeq) uncharacterized protein LOC108854865
KO
K11797
PH-interacting protein
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rsz04121
]
108854865
Ubiquitin system [BR:
rsz04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
108854865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WDR55
Beta-prop_SCAP
WD40_MABP1-WDR62_2nd
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Bromodomain
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_HPS5
VPS8_N
Auxin_resp
Beta-prop_WDR35_TULP_N
Beta-prop_IP5PC_F
Beta-prop_SPT8
WDR90_beta-prop_4th
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
108854865
NCBI-ProteinID:
XP_018484032
UniProt:
A0A6J0NH02
LinkDB
All DBs
Position
4:43646179..43655174
Genome browser
AA seq
1550 aa
AA seq
DB search
MDWIHKSSTPCMDTSSSVPANVPLQRQERLVCHSSSPADVDMDLREVYFLILHFLSTGPC
DRTFGHLRDEILEKGLLPRRYHSWWSRSGTCTGRADDDGISFPLSYDNLVERYPHIEKDH
LVKLLKQLILNPPLPSHVRVEGNTLNAADVPTLLGSGSFSLVDHKITEFQKVRHVASYLR
WPHMHADQVRGLSLREIGGGFRKHHRAPSIISACHAIAKPSTMVQKMQNIKKLRGHRNAV
YCAIFDRSGRYVITGSDDRLVKIWSMETALCLASCRGHEGDITDLAVSSNNALVASASND
FVIRVWRLPDGMPISVLRGHTGAVTAIAFSPRQASVYQLLSSSDDGTCRIWDARYSQWLP
RIYVPNPLDAGTGKSNFTSSNAASTSNASKSHQILCCAYNANGTIFVTGSSDSNARVWSA
SKSNLDDTEQPTHELDVLRGHENDVNYVQFSGCAVAPRSSTTETLREDCYPKFKNSWFCH
DNIVTCSRDGSAIIWTPRSRKFHGKSGRWMKGYHLKVPPPPLPPQPPRGGPRQRLLPTPR
GVNMIIWSLDNRFVLAAIMDCRICVWNAADGSLVHCLTGHSESSYVLDVHPFNPRIAMSA
GYDGKTIIWDIWEGIPIKVYDIGRFKLVDGKFSQDGTSIVLSDEVGQIYFLNTGQGESQK
AAKYDQFFLGDYRPLIRDTNGHVLDQETQLLPHRRNLQDLLCDSSMIPYPEPDQTMFQQR
RLGALGVEWRPSSIKFSVGPDFSLGQDYIMPPLADLDRLIEPLPEFIDAMYWEPEHEVLS
DDNDSEYNAEVSSDGAKASPCSNSSNELECSSEDSDVENIYENSSHRKRRRQYHRADVAT
SFGRRDKRILDEIDSSKFGNKRTKNRRIGVKASKRRYSDVKESRPQRAAAQNARSLLSKI
SGSSSDDVDDSSNSDSDRSASPLQQLEKPSQKLESLSNDKQKKRLIVKISVKKPTESVES
KRGVMNQADLEHVSSKSLEENDKVIGIYSREAGSSSVDAKDASTCQDMPHSMNTPQREKA
NNQFIKSSDQDQNMCKWREEISLCESTELTESENIVEAQTFNGDDDLSRVEPSQLSHCDV
DTSMEVEEIIPKKFRRLRLKLRHPSSPPKIEPDEVADDIADSGEGLASKAPSSMNPVMDS
EPVRDNVRYSPAHDCEFGEATADVIRRKRSMRLKATSSQSIARNSVLRLRSGSGSVGKVK
KLGIPSTSVYDGASLEEWPSTSRAGSRSASTSKQSLNTGIRLDNVSRKVSWLMLSEHEEG
CRYIPQLGDEVVYFKQGHQEFLDRELNDNDRSRYLPRNLGAVEFCKVEKLNYDTYPGSGE
SCCKMTLRVLDSSSSRKEFQLTLPDLINFPDFIVEKTRYDAAIKTNWEIGDECRVWWRNE
SSEAGAWWEGRIEFSEAKSTNLPDSPWERYKVVYETGDTNLHSPWEFDNPQFPWENSTMD
EESRDKLLSLFAGLVKSISKHQDSYGIQKLNEAAQKMDFCNRFPVPLYPELIHQRVENQY
YRSMGSFKHDMDVMLSNAESYFGANAHMRSKIKRLRDKITKTLRKVSQSC
NT seq
4653 nt
NT seq
+upstream
nt +downstream
nt
atggattggatacacaaatcatctactccttgtatggacacttccagttccgttccagca
aatgttcctcttcagcgacaggagagacttgtttgccattcttcttcgccagccgatgta
gatatggaccttagagaagtttatttcctaatattgcatttcctttctaccggcccctgc
gatcgaacctttgggcacctgagagatgaaattttggaaaaagggcttttgccccgtaga
tatcattcctggtggtcaagaagtggaacttgcactgggcgtgctgacgatgatggcatc
tccttccctttgagttatgataacttagtagagaggtatcctcatattgaaaaggatcac
ttggtgaagcttctcaaacaactgattttaaacccacctcttccttcgcacgtgagagtt
gaaggaaatactcttaatgctgctgatgttccaacgctattgggatctggctccttttca
cttgtggatcacaaaattacagagtttcagaaagttaggcatgttgcatcatacttacgc
tggccgcatatgcatgccgatcaagtgcgtggcctaagtcttagagaaattggaggtggt
ttcagaaaacaccaccgtgctccgtccattatttcagcatgtcatgcaattgcaaaacca
tcaacaatggttcagaagatgcaaaatataaagaagctcagaggacatcgtaatgctgtt
tactgcgctatatttgatcgctctggaagatatgttatcactggttccgatgaccggctt
gttaaaatttggtcaatggaaactgcgctttgcttggctagctgccgcgggcatgaaggt
gacattacagacttggccgttagttcaaacaatgctttggtagcatcagcatcaaacgat
tttgtaattcgagtttggaggttgcctgatggaatgccaatttctgtattgcggggacat
actggagctgttactgcgattgcgttcagtcccagacaggcgtcggtttaccagctctta
tcgtcatcagatgatggaacctgtcggatctgggatgctaggtactctcagtggcttcct
cgaatctatgttccaaatccgttggatgctggcactggaaaaagcaattttacatcttct
aacgcggcatccacaagcaatgcatccaagagtcatcaaatactatgttgtgcgtacaat
gctaatggaaccattttcgtcacgggtagctctgacagcaatgcgagggtttggagtgcc
tcaaaatctaacttggatgatactgaacagccgactcatgagctggatgttctacgtggc
catgagaatgatgtcaactatgtgcagtttagtggttgtgctgtggctccaagatcttct
acaactgaaactctgagggaagattgttacccaaagtttaagaattcctggttttgtcat
gacaacatagtaacctgctctcgtgatggtagtgcaattatatggacaccaagatcacgt
aaattccatgggaaatctggacgctggatgaaaggatatcatttgaaggttccacctcct
ccacttcctccacaacctcctcgaggagggccacgccagaggcttcttccaacaccacgg
ggtgtcaatatgattatatggagcctggataatcgtttcgtacttgccgctatcatggat
tgcaggatttgtgtttggaatgctgctgatggtagcttagtgcattgtttaacaggccac
agtgaatcgtcctatgtcttggatgtccaccctttcaatccacggatagctatgagcgcc
ggctatgatgggaaaacaataatctgggatatatgggagggtataccaatcaaagtatac
gatatcgggcgatttaagttggttgatggaaagttttcacaagatgggacatctattgtg
ctttcagatgaagttggccagatatattttctaaacacgggacaaggagagtctcaaaaa
gctgctaaatacgaccagttcttccttggtgactaccgtcctcttattcgagataccaat
ggacatgttcttgatcaggagactcagcttcttccccatcggagaaatcttcaagatcta
ctttgtgattcaagtatgattccgtatccagaacctgaccagacaatgtttcagcaacgc
agactgggtgcattaggagtcgaatggcgtccttcctcgataaagttttccgttggccct
gattttagtctaggtcaagattatattatgcctcctttggcagatctggatagattgatc
gagccactgcctgagtttatagatgcgatgtactgggaaccagaacatgaagttctgagt
gatgacaatgattcggagtacaatgctgaagtttcctctgatggagctaaggcaagccca
tgttccaactcttcaaatgaacttgagtgcagttccgaggacagtgacgttgaaaatatt
tacgaaaatagctctcatcggaaaagaagaagacaatatcatagagctgatgtggctact
tcatttggaaggcgtgataagaggattttggatgagattgatagctcgaaatttggaaat
aagagaaccaagaaccgaagaattggcgtgaaggcttcaaaaagaagatattctgatgtc
aaggaatcacgaccgcaaagagcagccgcgcaaaatgctcggtccttgctttcaaaaatt
tctggaagctcttcggatgacgttgatgattcatccaatagtgactctgatagaagcgca
tcacctttgcaacagttggaaaagccatctcagaagcttgaatctctttcaaatgacaaa
caaaagaaaagattgattgtaaagatctcggttaagaagccaacagagtctgtggaaagc
aagagaggtgtaatgaatcaagctgatttggagcatgtttcttcgaaatctttggaggag
aacgataaagtgattggtatatactctagggaagctgggtcaagttctgtagatgcaaaa
gatgcgtctacgtgtcaggatatgccccattctatgaatacgccacagagagaaaaggcc
aataatcagtttataaaatcttcagatcaggaccaaaatatgtgcaagtggagggaagag
atttctctttgtgaatcaaccgaattaaccgagtctgagaacattgtagaagcccaaaca
tttaatggggatgatgatttgtcaagagttgaacctagtcagctaagtcactgtgatgta
gatacttccatggaagtcgaggagattattccaaagaaatttcgacgactgagattaaag
cttcggcaccccagcagccctccaaaaatagagcctgatgaggtggcagatgatattgca
gatagtggagaaggtcttgcatctaaagctccctcttccatgaatcctgttatggattct
gaacctgtgagagataatgttagatactctcctgcacatgactgtgagtttggagaagct
acagccgatgtgatacgtaggaagagatccatgagactgaaggccacttcaagtcagtct
attgcaagaaacagtgtattacgtttgaggtcaggctctggatccgtaggtaaagtaaag
aaactagggattccgtccacaagcgtgtatgatggtgcatcacttgaagaatggccttct
acttcaagagctgggtcccggtctgcaagcaccagcaaacaaagtctgaatactgggatt
aggttggataatgtgtcaaggaaagtctcatggttgatgttgtcagaacacgaggaaggc
tgccgttatataccccagctaggggatgaagttgtttacttcaagcagggtcatcaagag
ttccttgatagagaattaaatgacaacgaccgatcaaggtaccttcctcgaaacctagga
gcggtagagttttgtaaagtcgagaaactcaactacgatacatatcctggttctggggag
agctgctgcaaaatgactctcagggtcctggattcttcttcttcccgcaaagagttccaa
ctaacactacctgacctcattaatttcccggattttattgtggagaagactcgatacgat
gctgcaatcaagacaaactgggaaataggtgatgaatgccgtgtgtggtggagaaatgaa
tctagtgaagccggtgcttggtgggaaggaaggattgagttttcagaagctaagtccact
aacctcccggacagtccatgggagagatacaaagttgtctatgaaactggggacacgaat
ctccacagcccctgggagtttgacaatccccagtttccttgggaaaactctactatggac
gaagaatcaagagataaactgctttctttatttgctggactagtgaagtcaatcagcaaa
catcaggatagttatggaatccaaaagctaaacgaagctgctcaaaagatggatttctgc
aataggttcccagttcctttatacccagagctgattcaccagagagtagagaatcagtac
tacagaagtatgggatcgtttaagcacgacatggatgtaatgctgtcaaacgctgaatct
tattttggtgcaaacgcacatatgcgttctaagataaagcgactccgagataaaatcaca
aaaacgttaaggaaggtttcacaaagttgttga
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integrated database retrieval system
