Raphanus sativus (radish): 108854871
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Entry
108854871 CDS
T06014
Name
(RefSeq) ubiquitin receptor RAD23d isoform X1
KO
K10839
UV excision repair protein RAD23
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03420
Nucleotide excision repair
rsz04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
108854871
09124 Replication and repair
03420 Nucleotide excision repair
108854871
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
rsz03051
]
108854871
03400 DNA repair and recombination proteins [BR:
rsz03400
]
108854871
Proteasome [BR:
rsz03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
108854871
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
108854871
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
Dsc3_N
TECR_N
CUE
UBA_RAD5A
UBA_3
SAP130_C
Motif
Other DBs
NCBI-GeneID:
108854871
NCBI-ProteinID:
XP_018484042
UniProt:
A0A6J0NH12
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Position
4:29475826..29478670
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AA seq
381 aa
AA seq
DB search
MKIFVKTLKGTNFEIEVNPADTISETKRRIETHQGAQYPAAQQMLIHQGKVLKDETTLEQ
NNVVENSFIVIMLSKAKVSSSGPSTASAPAPAPQAQPAQTVATPQVAAPTVSVPEPTSVA
ATVAAPTAAATSTQTDVYGQAASNLVAGNHLESTVQHILDMGGGSWDRDTVTRALRAAFN
NPERAVEYLYSGIPAQAEIPPAPQAPATGGQAANPLAQTQQEAAQVPATGGPNANPLDLF
PQGMPAADAGTGAGNLDFLRNSQQFQALRGMVQANPQILQPMLQELGKQNPQLVRLIQEH
QGDFLRLINEPVEGEENAMEQLEAAMPQAVTVTPEEREAIERLEAMGFDRAMVLEVFFAC
NKNEELAANYLLDHMHEFEEQ
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcttcgtcaagactctcaaggggaccaacttcgagatcgaagtgaatccggcg
gatacgatctctgaaactaaaagaagaatagaaactcatcaaggtgcgcaatacccggct
gctcagcagatgctaatccaccaaggaaaagttctcaaggatgagactacattggaacag
aacaacgttgttgagaacagtttcattgtcatcatgttgtctaaggccaaggtttcttca
agcgggccatcaactgcatctgcacctgcacctgcacctcaggctcagcctgcacagaca
gtagctacacctcaggtggctgctccaactgtctcagttccagaacctacaagtgtagct
gcaaccgttgcagcacctactgctgctgctacttcgacgcagacagatgtgtatggtcaa
gcagcgtcaaaccttgttgctggaaatcatctagagtccactgttcagcatattcttgac
atgggtggaggtagttgggaccgtgacactgttacccgagccctgagagccgcatttaac
aaccctgaaagagctgttgaatatctctactcaggaatccctgctcaagctgaaatcccg
ccagcccctcaagccccagctacgggtggacaggctgcaaatcctctagcacagacccaa
caagaagctgctcaagttcctgcaactggtggtccaaacgcaaatccattagacctgttc
cctcagggcatgcccgctgcagacgctggtactggagctggtaatcttgatttcctgcgt
aacagtcaacagttccaagccctacgaggaatggtacaagcgaaccctcagattctacag
cctatgcttcaggagcttggtaaacaaaacccgcagcttgtgcgtctaattcaagagcac
cagggcgacttcctacgcttgataaatgaacctgtcgagggagaagagaacgccatggaa
cagttggaagcagccatgccacaagctgttaccgtcacacctgaagagcgtgaagccatt
gaacggctcgaagcgatggggtttgatcgtgcgatggtcttggaagtgttctttgcgtgc
aacaagaacgaagaacttgcagctaactatcttctagatcacatgcacgagtttgaagaa
caatag
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