Raphanus sativus (radish): 108854887
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Entry
108854887 CDS
T06014
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein MLH3
KO
K08739
DNA mismatch repair protein MLH3
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
108854887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsz03400
]
108854887
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
108854887
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
HATPase_c_3
DNA_mis_repair
HATPase_c
Motif
Other DBs
NCBI-GeneID:
108854887
NCBI-ProteinID:
XP_056865240
UniProt:
A0A9W3DN03
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Position
4:1220908..1227071
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AA seq
1194 aa
AA seq
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MKTIKPLPEGVRHSMRSGIIMFDMARVVEELVFNSLDAGATKVSIFVGVVTCSVKVVDDG
SGVSRDDLVLLGERYATSKFNDFTNVETASESFGFRGEALASISDISLLEITTKAVGRPN
GYRKVMKGSKCLHLEIDDDRKGSGTTVTVRDLFYNQPVRQQYMRSRFIFALSEPQEMLES
ITKCVFRIALVHSNVSFSVLDIESDEELLQANPSASAFSLLMRDAGTEALNSLCKVDVTD
GMLNVSGYISGPRDSFKXALQYIYINSRFISKGPIHKLLNNFAASFDSTDDWKSTDGLQT
GRRSRLQHCPGYILCITCPRHLYEFSFEPSKTNVEFKNWEPILAFIERIILAKWKKDEGL
EICDEGADLLAKGDRQDLIDDMGRLQEEWPETIEPTKKKRKRSNDQTPCSFLLSPSGDFR
KDDGYXGKEKWSPKYELEVKXSNLKEQNTVAEFDGLTASVRQPCDVDMQKNEDFPQVTDL
LGTSLVSGDKCSKQFLTRCQTSKPLNVYNDFTEDTDVLNFQFEEVDDELDASNYIGKHLL
RGCSSRESLALHEPKLSHGEWSESGMKLDDKRRNSLINVVETGEGDSYCDVLSDTLEFHG
MTRTPVCSLGSSWQDTDWFNPQHSLDNPSVGIGEDFNINPVDITEFRSYEDSFVKKRYFS
SANVGRSGPGSYRLSSECSTVFSTSPTAEWKSDYQKGCQILEGSLNVGRMPDPGYFFSEA
NNVKFDHEAIPQIDCRKTSTDSFADIRNCTESGEKIFQSLWGNADNVGIEQHSIGKDKFS
YRYGSKKNVAKRRSRRSRSAPPFYQEKKRFVSLSCKADTKSKNSEPSEPDDLECLTQPCN
TSHMHLNDSILDDVSYDHLQEPGKRMSSASDLKASAGCSIVHSETRDEDGDEDFSSEENL
DPVKSTTKWRHNCPSPQVAKESHVLHDQDSVLDICSGFLHLRSDESLVPESINRQSLEDA
KVLQQVDKKYIPIVACGTVAIVDQHAADERIRLEELRKKVLAGEARTVTHLSADQELVLP
EMGYQLLQSYSDQIRDWGWICSINAEGSTSFKKSMSIIKRKPAPITLNAVPCILGVNLSD
IDLLEFLQQLADTDGSSTIPPSVLRVLNSKACRGAIMFGDSLLPSECSLIIEGLKQTSLC
FQCAHGRPTTVPLVNLKALHKQIAKLEPRQPWHGFERREITLDRAKSRLDEAKS
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgaagacgatcaagcccttgccggaaggtgttcgtcactcgatgcgctccggaatcatc
atgttcgacatggcgagagtcgtggaggagctcgtcttcaacagtctcgacgctggtgcc
accaaggtgtctatcttcgtgggtgttgttacatgctctgttaaggttgtcgatgatgga
tcaggcgtttccagagatgatttggttttgttgggagaaagatatgctacgtcgaagttt
aacgacttcacaaatgtggagacagccagtgaaagttttggattccgaggagaggccttg
gcttccatatcagatatctcgttgcttgaaatcacgactaaagctgttgggagacctaat
ggttatcggaaggttatgaagggatccaagtgtctgcatctagaaattgacgatgataga
aaaggctctggcacgactgtaactgtccgagatctgttttacaatcaaccagtgagacaa
caatatatgcgatccaggttcatcttcgccttgtctgaaccccaagaaatgttggaatct
ataacaaagtgtgtgttccggattgcgcttgttcactcgaatgtttccttcagtgttctt
gatatcgagagtgatgaagagcttctccaagccaatccttctgcttcagcattttcgcta
ctgatgagagatgcagggaccgaagctttaaactctctttgtaaagtagacgttacagat
ggcatgttgaatgtctctgggtatatatctggtcctcgagatagtttcaagtaagctttg
cagtacatatatatcaattcaagattcataagcaaaggtcccatacacaagctactgaac
aacttcgctgctagttttgattctacggatgactggaagtctacagatgggctacaaaca
ggacgacgtagcagacttcaacactgtcctggctacatattgtgcataacatgtccacgt
catctttatgaattctcgtttgaaccctcaaagacaaacgtcgagttcaagaactgggaa
cctatacttgccttcatagaaagaatcattctagccaagtggaagaaagatgagggtctt
gaaatttgtgatgagggagctgatctgctggcaaaaggtgatagacaagacctgattgat
gacatgggtagacttcaagaagagtggccagaaactatagaacctacaaaaaagaagcgc
aagagaagtaatgatcagacaccttgtagttttctcttgtccccgtctggtgactttaga
aaagatgatggttatntaggaaaggagaaatggtctccaaaatatgaacttgaagtgaaa
ngatcgaatcttaaagagcaaaacactgtagctgaatttgacggtctgactgcttctgtt
cgacagccatgtgacgtcgatatgcaaaagaatgaagactttccacaagtcactgacctc
ctaggaacaagcttggtttctggcgataagtgcagcaaacagtttctaacaagatgccaa
actagcaaacctctcaatgtctacaatgattttacagaagatacagacgtattaaatttt
cagtttgaagaagttgacgacgagttagatgccagcaattacattggaaagcatcttttg
cggggttgctcctcaagagaaagcctagcccttcatgagcctaaactatctcatggtgaa
tggtctgaatcaggcatgaaacttgatgacaaacgaaggaattcactgattaatgtcgta
gagaccggagaaggtgattcttactgtgatgttctttctgacacacttgaatttcatgga
atgaccaggactcctgtttgttccctagggagttcatggcaggatactgattggtttaat
ccacaacattccttagacaatccaagtgttggaattggagaagactttaacatcaacccc
gtagatattacggaatttcgttcttatgaagacagctttgtcaagaaaaggtacttttcc
tcagccaatgtcgggaggtctggtcctggtagttaccgtctgagttctgagtgctctaca
gtgttctccacatctcctacggccgagtggaagtctgattaccagaaaggttgtcaaatt
cttgaagggagtttgaacgtgggaaggatgcctgaccctggatattttttcagtgaagct
aacaacgtcaaatttgatcatgaggccatacctcaaatcgattgccggaaaaccagcaca
gattctttcgcagatattcgaaattgcaccgagtcaggtgaaaagattttccagtcattg
tgggggaatgcagataatgtgggtattgaacaacatagtatcgggaaggacaaatttagt
tataggtatgggtcaaagaaaaatgttgctaaacgaaggtcaagaagaagccgctctgct
cctccattttatcaagagaaaaagaggtttgtcagtttaagttgtaaagcagacacaaaa
tcgaagaactctgaaccatcagaacctgatgatttggagtgcttgacacaaccctgcaat
acatctcacatgcatcttaacgacagcattcttgatgatgtgtcatatgaccacctacaa
gaaccaggaaaaagaatgagttcggcctcagacttgaaagcatctgctggttgcagtatt
gtgcactcagagacccgagatgaggatggagacgaagacttcagctcagaggaaaatctg
gatccagttaaatccacaacgaagtggcgccataactgtccctcccctcaggttgccaag
gaatcacacgtgcttcatgatcaagatagtgtacttgatatatgttcaggatttttgcac
ctgcgatccgatgagtccttggttcctgaatctataaatagacagtcccttgaggatgct
aaggttctacaacaggtggataaaaaatatatcccaattgttgcttgtggaacagttgcc
atcgttgatcagcatgctgccgatgaaagaattcgcttagaagagctgcgtaaaaaggtc
ctggctggggaagcaagaacagtcacccatttgagtgcagaccaagagttggtcctgcca
gagatgggttatcagttactccagagttattcagaccagataagagactggggttggatc
tgcagcattaatgcagaagggtcaacgtcctttaagaagagcatgagcatcattaaacgg
aagccagctccaatcacacttaatgcggtcccatgcattctgggtgttaatctatcagat
attgatctattagagtttcttcagcagcttgctgatactgacggatcatcaacaattcct
ccatctgttcttcgagttctgaactccaaagcatgtagaggtgcaataatgttcggagat
tctctgttaccctcggagtgctctttaatcatcgaaggactgaagcagacctcactgtgt
ttccagtgtgctcatgggcgaccaacgacagttcctctagtcaatttgaaagcattacac
aaacagatagcaaagctcgaaccaagacaaccgtggcatgggttcgaacgcagagaaatc
acacttgatcgtgctaagtcacgcttagatgaagctaaaagctaa
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