Raphanus sativus (radish): 108855167
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Entry
108855167 CDS
T06014
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03008
Ribosome biogenesis in eukaryotes
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
108855167
09123 Folding, sorting and degradation
03018 RNA degradation
108855167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
108855167
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108855167
03009 Ribosome biogenesis [BR:
rsz03009
]
108855167
03016 Transfer RNA biogenesis [BR:
rsz03016
]
108855167
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108855167
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
108855167
Ribosome biogenesis [BR:
rsz03009
]
Eukaryotic type
Pre-60S particles
RNases
108855167
Transfer RNA biogenesis [BR:
rsz03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
108855167
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
108855167
NCBI-ProteinID:
XP_018484416
UniProt:
A0A6J0NJZ1
LinkDB
All DBs
Position
4:complement(20720636..20726937)
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AA seq
996 aa
AA seq
DB search
MGVPSFYRWLIERYPLILQDVIEEEPLDAKVRVDTSKPNPNGVEYDNLYLDMNGIIHPCF
HPEDRASPTTFSEVFQCMFDYIDRLFVMVRPRKLLFLAIDGVAPRAKMNQQRSRRFRAAK
DAAEAAAEEERLRQEFESQGKRLPPKLDSQVFDSNVITPGTEFMSTLSFALQYYIHVRLN
SDPGWKNIKVILSDANVPGEGEHKIMSYIRLQKNHPGYNPNTCHCLYGLDADLIMLALAT
HEVHISILREVVFTPGEQDKCFLCGQLGHRAADCEGKVKRKAGDLFDKSETNVVVKKPYQ
FVNIWTLPEYLEHDMQIPNSQLQKHLDRIIDDFVFICFFVGNDFLPHMPTLEIREGAIEL
LMSVYKKEFGSSASYLSNGSKLNLKNVEHFIQAVGLYENNIFQRRAQNHQRQSERFSRDR
AQSSRNCNYDPVVQLDSLVEVSDSLRPSLEDNTSVANVETEYNIKEEEIDNSEELKFKLK
KLLREKSDGFSSGKGEEDKVRLGVQGWRERYYEEKFIAKTIEEMEQIRKDVVLKYTEGLC
WIMHYYYHGVCSWNWFYPYHYAPFASDLKCLDKLDIKFELGSPFKPFNQLLAVLPSASAH
ALPECFRKLMTDPNSPIAEFYPPDFEIDMNGKRYSWQGIAKLPFIEEQRLLDAAAKVEHS
LTKEEVRRNSVLSDMLFVVSSHPLAELIRSLSSRTIKLSNKEREIATEKIDPGLSEGMNG
YLALCGGDSQPSSFRSPIEGMEDVLANQVICAIYKLPDDLRGTDIARPPPGVVLPKKTVQ
LADLKGGANLWHEDGDRRRAPAKIIKIKRYNPQGSITGDRLGKAAHRLVLQTIDSQPGKT
HINSEPALCPNTIFHNIQVTKKVASFRGSVVQKKHPQCELALKKNRSHQSEFTEEKTAFR
KRKEKEKRGRNLANRRDRAKNEQQGNKGESNLENKRRRSEVNEDNRLEHKRPRPTEERNI
NSEGKEENKCAQAELTEEEKNAKRKLKKRRRQKKDI
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccgtcgttctacagatggttaatcgagaggtatccattgattttgcaagat
gtcatcgaagaagaacccctcgacgccaaggttcgggtcgatactagcaaacctaatcca
aacggcgtcgagtatgacaatctgtacctcgacatgaacggaatcattcatccttgtttc
catcctgaagacagggcttctccaacaacattttcggaggtgtttcaatgcatgttcgat
tacatagacagacttttcgtcatggttcgacctcggaagcttttattcttggctattgat
ggtgttgctccaagggctaagatgaatcaacaaagatctagaaggtttagagctgcaaaa
gatgcagcagaggccgctgctgaagaagagcgactgaggcaagagtttgagagtcaaggg
aagaggttgcctcctaaactggactctcaagtttttgactctaatgttattactcctgga
acggagttcatgtctactctctcatttgcgttgcaatactacattcacgtcagacttaat
tctgaccctggttggaaaaatattaaggttatcctctcagatgctaatgttcctggtgag
ggcgaacacaagatcatgtcttacatacgtcttcaaaagaaccatcctggttacaacccc
aacacttgtcattgtctctatggtttggacgcggacttgatcatgctggctttggccaca
cacgaagttcatatttcaatccttcgtgaggttgttttcactcctggagaacaagacaaa
tgcttcttgtgtggtcaacttggacaccgagcagcagactgtgagggcaaggttaagagg
aaggcaggagatttgtttgataaatctgagacaaatgtggtggttaagaagccataccag
ttcgtgaacatctggacgcttccagagtatttggagcacgacatgcagatacctaactcg
caactgcaaaaacatttggaccgcataattgatgacttcgtcttcatctgtttttttgtt
ggcaatgatttcctgccacatatgcctacactggagatacgggagggtgctatagaatta
cttatgtctgtgtacaagaaggaatttggatcaagtgcaagttacctaagcaatggaagc
aagctgaatttaaagaatgtggagcattttatccaggccgttgggctctatgaaaataat
atatttcaaaggagagcacaaaaccaccagaggcaatcagaaaggtttagtcgtgaccga
gctcaatcgagcagaaattgtaactatgacccggttgtgcaactagattctcttgttgaa
gtgtccgattcattgcgtccctcattggaagataacactagtgtggcgaatgtggaaaca
gaatataacatcaaagaagaagaaatagataacagtgaagaattgaagtttaagcttaaa
aaactgttgcgcgaaaaatcagatgggttcagttcaggaaaaggagaagaagataaggtg
aggctaggtgtacaaggatggagggagagatactatgaggaaaaattcatagctaagacg
atagaggaaatggaacaaatacgcaaggatgttgttttgaagtatacagaaggtctttgt
tggataatgcattactattatcatggtgtttgttcatggaattggttttatccttatcat
tatgcacctttcgcgtctgatctcaagtgccttgataagctagatattaagttcgaacta
ggttccccatttaaaccattcaatcagcttctggcagttctgccatctgcaagtgcacat
gctctcccagagtgttttaggaaactgatgacagatccaaattcacctatagctgagttt
tatcctcccgattttgagattgacatgaatggaaagcgctattcttggcagggtatagca
aaactgccttttatagaagaacagcgtcttctggatgcagccgcaaaagtggagcactca
ctgacgaaggaggaagttcgaagaaacagtgtgttgtctgacatgctctttgtggtttca
tctcatccccttgctgagctcatccgttctctcagtagccgtactatcaaattgagcaac
aaagaacgagaaatagctacagaaaaaattgaccctggactaagtgaagggatgaatggt
tacttagctttatgtggtggagatagtcagccttcatctttcaggtcccccatcgagggg
atggaagatgtattagccaatcaagtcatttgtgccatatacaaacttccagatgatctt
agaggaactgacattgctcgtccacctccaggagtggtgttgcctaaaaagactgtacaa
ctagcggatttgaaaggtggagctaatctatggcatgaagatggtgatcgaagacgagct
cctgcaaagattataaaaataaagaggtataacccacaaggatccattacgggggatagg
cttgggaaggcagcgcacagacttgtgttacagacaatagattcccaaccgggtaagacg
cacatcaactcggaaccagcattgtgtccgaatactatattccacaacattcaggtgacg
aagaaagtcgcatcattccgggggagtgtggtacagaagaaacaccctcagtgtgagtta
gctttgaagaaaaacagaagccatcaaagtgaattcaccgaggagaagactgcattcaga
aagcgcaaggaaaaggagaaaagagggagaaatttggctaacagaagggacagagcgaag
aatgagcagcaaggaaacaaaggagaaagcaatctggaaaacaaaaggcgtcgaagtgaa
gtcaatgaggacaacagactggaacacaaaaggcctcgaccgactgaggagagaaacata
aactctgaggggaaggaagaaaacaaatgcgctcaagctgaactcactgaggaggagaag
aatgcaaaacgaaagctaaagaaaaggagaagacagaagaaagacatttag
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