KEGG   Raphanus sativus (radish): 108855287
Entry
108855287         CDS       T06014                                 
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 2
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03040  Spliceosome
rsz04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108855287
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    108855287
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rsz03041]
    108855287
   04121 Ubiquitin system [BR:rsz04121]
    108855287
   03400 DNA repair and recombination proteins [BR:rsz03400]
    108855287
Enzymes [BR:rsz01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     108855287
Spliceosome [BR:rsz03041]
 Complex B
  Other components
   Prp19 complex
    108855287
 Complex C
   Prp19-CDC5 complex
    108855287
Ubiquitin system [BR:rsz04121]
 Ubiquitin ligases (E3)
  U-box type E3
   108855287
DNA repair and recombination proteins [BR:rsz03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    108855287
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_THOC3 Beta-prop_WDR5 WD40 Beta-prop_IFT122_1st Beta-prop_WDR3_1st Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd WD40_MABP1-WDR62_2nd WD40_Gbeta EIF3I WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd DSE1_N ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_NOL10_N WD40_MABP1-WDR62_1st Beta-prop_EML Beta-prop_HPS5 Beta-prop_SCAP CFAP251_N Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_WDR41 Beta-prop_IFT140_1st Beta-prop_EIPR1 ASA1 WDR90_beta-prop_4th Beta-prop_VPS8 Beta-prop_DCAF12 PEP5_VPS11_N Beta-prop_SPT8 Beta-prop_Aladin U-box NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_DCAF4 eIF2A PROPPIN zf-Nse WD40_like PAS_11 gpW PUMA_CC
Other DBs
NCBI-GeneID: 108855287
NCBI-ProteinID: XP_018484565
UniProt: A0A6J0NJ29
LinkDB
Position
4:complement(38305296..38309715)
AA seq 525 aa
MNCAISGEVPEEPVVSTKSGLLFERRLIERHISDYGKCPVTGEPLTLDDVVPIKTGKVIK
PKPVHTASIPGLLGTFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDSACRVIARLKK
ERDEARQLLADVERHIPAAPEAVTSNAALSNGKRAAGDEELVPDAKKLCPGISAEIITEL
TDCNAALSQKRKKRQIPETLASIDSLERFTQLSSHPLHKTNKPGICSMDILHSKDVIATG
GLDTTAVLFDRPSGQILSTLTGHSKKVTSVKFVGDSDLVLTASADKTVRIWRDSGDRNYA
CAHTLNDHSAEVRAVTVHATNKYFVSASLDSTWCFYDLSSGLCLAKVSDDSERVDYTAAA
FHPDGLILGTGTSQSVVKIWDVKSQANVAKFDGHTGEVTSISFSENGYFLATAAEDGVRL
WDLRKLRNFKSFLSADANSVEFDPSGSYLGVAASDIRLYQTASVKAEWNLIKTLPDLSGT
GKATCVKFGPDAQYVAVGSMDRNLRIFGLPGDQTANADDDSAQDS
NT seq 1578 nt   +upstreamnt  +downstreamnt
atgaactgcgcaatttccggagaagttcccgaagagccagtggtttcgaccaagtcaggt
ttgctcttcgagaggcggttaatcgagaggcatatatcggattatgggaagtgtccggtt
actggagaacctcttacacttgatgacgttgttcccatcaaaaccgggaaggttattaaa
ccgaagccagtgcatacagctagcatccctggattgcttggaacgttccaaaatgaatgg
gacggtttgatgctatcaaattttgcactggagcaacaactgcatactgcaaggcaagag
cttagtcatgccttgtatcagcatgactctgcttgccgcgtgattgctaggcttaaaaaa
gaaagagacgaagctcgccaattgcttgcagacgttgaaagacatatacccgcagcccca
gaagccgtaacatctaatgctgctcttagtaacggtaaacgagctgccggtgatgaagaa
ttggttcctgatgcgaagaagttgtgtcctggcatttcagctgaaattatcacggaactg
acagattgcaatgctgctctttcccagaagcgcaaaaagcgacagattcctgaaacattg
gcttcaatagattctttggagaggttcactcagctatcaagccacccacttcacaagacc
aacaaaccgggcatttgttcaatggacatcctacattctaaggatgtcattgctaccgga
ggactggatacaactgctgttctctttgatcgcccttcagggcaaatcttgtcaacactt
actggtcactcgaaaaaggttacaagtgtaaaatttgtaggtgacagtgatcttgtttta
actgcttctgctgacaagacagtccgtatctggcgggattctggggataggaattatgct
tgtgcgcatacattgaatgatcattctgcagaggtgcgagctgtaactgtgcatgccaca
aataaatactttgtgtcggcatctcttgacagtacatggtgcttctacgatctttcctct
ggcttatgccttgcaaaggtgtcggatgattctgagagggtggattacacggctgctgct
tttcatcctgatggtctcattctcggaaccggtacttctcaatctgttgttaagatttgg
gatgttaaaagtcaggcaaatgtggcgaagtttgatggacacaccggtgaagttacctct
atatctttctctgagaatggttatttcctcgcgactgctgccgaggatggtgttaggttg
tgggacctgcgcaagttaaggaacttcaagtcattcctatccgcagatgcaaactctgtg
gagtttgaccctagcggatcttatcttggtgttgctgcatcagatatcaggctataccag
acggcgagtgtgaaagctgaatggaaccttattaagacactccctgatctctccggcact
ggtaaagctacatgtgtgaagtttggtccagatgcacaatacgttgcagttggttccatg
gaccgtaacctacggatatttggtcttcctggtgaccaaacagccaatgccgatgatgac
tctgcacaagactcttga

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