Raphanus sativus (radish): 108855407
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Entry
108855407 CDS
T06014
Name
(RefSeq) transcription initiation factor TFIID subunit 4b
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108855407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
108855407
03036 Chromosome and associated proteins [BR:
rsz03036
]
108855407
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
108855407
Coactivators
SAGA/TFTC/STAGA complex
108855407
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
108855407
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF4
RST
SPMIP10-like
Motif
Other DBs
NCBI-GeneID:
108855407
NCBI-ProteinID:
XP_018484718
UniProt:
A0A6J0NLU5
LinkDB
All DBs
Position
4:19912849..19917532
Genome browser
AA seq
783 aa
AA seq
DB search
MDPSIFKLLEEDEDESMHSGADVDAFQAALNRDIEGSTNPPGNSQSPNEQFTKWKNGVGD
SNTNLQTQQHSTESTQTKEQQGSTGLENQHQQRADESYLPQDLHQAGQQRWENPSSQVPQ
TTGLQISEKNLTGNEPHNQKSESQYSKLQKISSGQQARGVEHPVNPPMNRNPKQVPFAAL
LPTLIAQLDKDREMQLRTLYSRLKKNEIPKESFTRLVKEIVGDQMLRSAVSKLQQEAYNQ
GKKGIQAHTEINNQKSQSDPRGVVHLNQLPSSTGSSVPVQGLTNHPQHNQMQRPPSSFPM
YTSSGSFHSFPGPSTNVSGSSLRPHLHDSHMRHVAHNQTVGSTGPGAPPQSTTNMMTMPK
FERPASVNDPGRVQGGAFQNNSSLPLNSAPSQGSSLSHVKQESFEQNKAAPGTSKEDLEK
ESSRMVLSAPSNMDPNTAMNSRGPLGTSQAGFNARMPPKKQTVGQKKPLETLGSSPPPPS
KKQKVVPNSVDQSIEQLNDVTAVSGVNLREEEEQLFSGGKEDSRVSEASRRVVHEEEERL
ILQKSPLQKKLAEIMAKVGLKQIGVDVERCLSLCVEERMRGLLSHIIRLSKQRVDTEKSR
HRTFITSDIRLQINEMNQKVKEEWEKKQAEAEKLKKPSESEEGDGGVDSEKEKEDNRSKG
LKGNKEDDDKMRTTAANVAARAAVGGDDTFLKWQLMAEARQKSVSETGKDGNQKTTSGGG
RNSKERQDGGRRFSGPGGRRLGKNQVPSLQPKVVRTISAKDVVAVLEREPQMSKSTLMYR
LIQ
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atggatccttcaattttcaagctcctcgaagaagacgaggatgaatcgatgcattcggga
gctgatgtcgacgccttccaagccgctcttaatcgagatattgaaggttccacgaaccct
cctggaaacagccagtctcccaatgaacagtttaccaaatggaagaatggtgtcggagac
tctaatacgaatctccagacgcaacaacacagcactgagagcactcagacaaaggagcaa
caaggatcaacaggtttagaaaatcaacaccaacaacgcgcggatgaatcttatttgcct
caagacctccaccaagcaggtcaacaacgctgggagaatccttcttcacaggtaccccaa
acaactgggttgcagatttccgaaaagaatcttactggtaatgaaccgcataatcaaaag
agtgaatctcagtattcaaaactgcaaaagattagtagtggtcaacaggctcgcggagtg
gaacaccctgttaaccctcctatgaaccgcaaccctaagcaagtaccgtttgctgctttg
cttcccaccttaatagcccaactcgataaagacagagaaatgcagctccgtaccctttat
tctagactcaaaaaaaatgaaatccccaaagagagtttcacacgacttgtgaaggagatt
gtaggcgatcagatgcttaggtcggctgttagtaaactacagcaggaagcttataaccag
gggaaaaagggaattcaagctcatactgaaatcaataatcaaaaatctcagtccgatcct
cgtggagtggtccaccttaaccaactaccttcgtcaacaggcagttcagttcctgtgcag
ggacttacaaatcatcctcagcataaccagatgcagcgaccaccaagttcttttcctatg
tataccagctccggtagttttcactcattcccgggtccaagcaccaatgtttctggttcg
tctttgagaccacaccttcatgattcccatatgagacatgtggcacataaccagactgtg
ggttcaactggtcctggagcacctccccagtctaccacaaacatgatgactatgcctaag
tttgagagacctgcttctgttaatgatcctggtagggttcagggcggcgctttccagaac
aactcatcgttgcctctaaactctgcacctagtcaaggatcatcactgtcccatgtgaag
caggaaagttttgaacagaataaggcagccccagggacttcgaaggaggatttagagaag
gagtcctctagaatggttttatccgcacctagcaacatggaccctaacacagcaatgaat
tctcgtggtccgttgggtacgtcacaagcaggttttaatgctaggatgccacccaagaag
caaactgtcggtcagaagaaaccacttgagacattaggttcttcaccgccaccaccaagc
aagaagcaaaaagtggtaccgaattctgtggatcaaagtattgaacagctcaatgatgtc
actgcagtcagtggtgtcaatctcagggaagaggaagaacaactattttctgggggaaag
gaggatagtcgtgtttctgaagcatctcgtagagttgtgcacgaagaggaagaaagatta
attttgcagaaaagtccactgcagaaaaagctggcagaaattatggcgaaagttgggcta
aagcagataggcgttgatgttgaacggtgcttgtctttgtgtgtagaggaaaggatgcga
ggactattatctcatatcattcggttgtcaaagcagcgggttgatactgagaaatctaga
caccggacctttatcacgtcagatattcggctacaaatcaacgaaatgaaccagaaggtg
aaagaggaatgggaaaagaaacaggctgaagcagaaaagcttaagaaaccaagcgagagt
gaagaaggtgatggtggagtggatagtgagaaggagaaagaagacaaccgttcaaagggc
ttgaagggaaataaagaggacgacgacaaaatgagaacgacagcagcaaacgttgctgct
cgtgctgctgttggaggagatgacacgtttttgaaatggcaattaatggcagaagctcgt
cagaagtctgtatctgaaactggaaaagacgggaatcaaaaaactacttcaggtggagga
agaaactccaaggagagacaagatggtggacgtcggttttctggacctggtggtcgaaga
ttagggaagaaccaagttccatcgcttcaaccaaaagtggtgaggacaatctcggcgaag
gatgtggttgctgtcctggaaagagagcctcagatgtctaaatccactctaatgtatcga
ttaattcaatag
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