Raphanus sativus (radish): 108855668
Help
Entry
108855668 CDS
T06014
Name
(RefSeq) pre-mRNA-processing factor 39-2 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsz03041
]
108855668
Spliceosome [BR:
rsz03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
108855668
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
TPR_14
HAT_Syf1_CNRKL1_N
TPR_1
TPR_12
TPR_8
Motif
Other DBs
NCBI-GeneID:
108855668
NCBI-ProteinID:
XP_018485041
UniProt:
A0A6J0NLR5
LinkDB
All DBs
Position
4:complement(16787707..16792136)
Genome browser
AA seq
1012 aa
AA seq
DB search
MVTTEASTAVSGMEPMSPPLESDGPTDFLDNERLKATFSSGSLDFDDWTLLISEVETSFP
DDIEKLCLVYDAFLLEFPLCHGYWRKYAYHKIHFCTLEDAVEVLERAIQAATYSLDVWLD
YCTFAVAAYEDPNDVCRLFERGISFVGKDYSCCALWDKYIDFLLIKKHWSSLAHVYLRTL
RYPSKKLDFYYKNFRKIAASLKEKIKCGIEVNGDLSSDPMDEDLAPKRHSEEEISVVIRD
LMGPSSSLAVAKALHAYLSIGEQFYQDSQELKEKISCFETQIRRPYFHVKPLDTNQLDNW
HKYLSFAETYGDFDWAIKLYERCLIPCANDAEFWFRYVDFVESNGGRELANFALARASQT
FVKDASAIHLFNARFKEHVGDASAASVALSRCGEELGVGFVENVTKKANMEKRMGNFEAA
ISTYREALKKTLSGKENLEITALLYVQFSRLKYMITNNADEAAQILIEGNEKVPHCKLLL
EELIRLVMMHGGGCRQVDLLHPIIDKEISHQDDSSGGLSAEDKENISNLYMEFIDLSGTI
HDVRKALRRHIKLFPHSAKAKLHESRPLGNSLRELIQQREKTRECLNQDLSTNKGTGSNT
LEEKKDFPLILNSDDADYINTEPNGESHVEENNNVADRKKLCESQNDLSTGQKSNEGGER
SREVSLPIKNTPPEPGFVSKQAHFSCSSVDTVKSDAIEIQPSGFRSHQNQEFLRQASRNR
FQRRDFNQNRRDHKPRSQERPPQMSYPPPVTTGRGGFNQLMGVSPRDNPSVSQSLQNQCQ
YPMVQPSNAYPPQAQIPGHHMNVASSENPAAVQNSFSQIPQNQHQGSAAQVQPSFAYPQS
QIPQHPVQSNDQTEGQVQSYEAYNQMWQQYYYYNYHYYQQQQQQQLLSEQPQPNQNNPHP
QQDPNLLSKQYQTQAGTQHPQSQHVDTQQHSQEPQNQQQILYQQQQQQEWFQQQQEYHLY
LQQQELQGEAKGHEQRPSVPQVSTRDSDILQKSGESGGHEVEHSSDTSITSI
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atggtgactacggaggctagcaccgccgtctccggtatggaaccaatgtctccgccccta
gaatcagacggccctactgatttccttgataatgagaggctaaaggcaacgttttcaagt
ggaagtcttgattttgatgattggactttgttaatctctgaagtagagacttcgttccca
gatgatattgagaagctgtgtctagtgtacgatgctttcttgttggagtttccgctgtgc
catggctactggaggaagtatgcttaccacaagatacatttttgcactctagaagatgct
gttgaagttctcgaacgagcaatccaagcagctacttattctctagatgtatggcttgac
tattgcactttcgctgttgctgcgtatgaagatcctaatgatgtttgtagattatttgag
agggggatctcatttgttgggaaagattattcttgctgcgctctctgggacaaatatata
gactttctcttgattaagaagcattggagttcactggcacacgtatatctccggaccctg
agatacccatccaaaaagttggatttttattacaagaacttcagaaagattgcagcttct
ttgaaagagaagattaaatgtggaatagaagttaacggtgacctttcttcagaccccatg
gatgaagatttggcccctaagcgtcacagtgaggaggagatctctgttgttataagagac
ttgatgggtccttcttctagcttggccgtggcaaaagcactgcatgcatatttgtcaata
ggggaacagttctatcaagattcgcaggaactgaaggaaaaaataagttgctttgagacg
caaatccgcaggccttattttcatgtaaagccgttggacactaatcagctagacaattgg
cataagtatctgagctttgcagaaacatatggggactttgattgggctattaagctttat
gagagatgcttaataccatgcgctaatgacgccgagttctggttccgctatgtggatttt
gttgaaagcaatggtggaagggagctagcaaacttcgcgttggcccgagcatcacaaact
tttgtcaaggatgcatctgctatccatctattcaatgcacgattcaaggaacacgttgga
gatgcatctgccgcttctgttgctctgtctcgatgtggcgaggagcttggtgttggtttt
gttgaaaatgtaactaagaaggctaacatggagaaacgaatgggtaattttgaagcagct
attagtacatacagagaggctctgaagaaaacactcagtggaaaagaaaacttagaaatc
actgcactgttgtatgttcaattttctcgtctcaagtacatgataacaaacaatgctgat
gaggcagctcagattctgatagaggggaatgagaaagttcctcactgcaaattactttta
gaggagcttataagactcgtaatgatgcatggaggagggtgtcgacaagttgatttgtta
catccaatcatagataaagaaatatctcaccaggatgattcctccggtggtctgagcgca
gaggacaaggagaacatttcaaatttatacatggagttcattgacctgtctggaaccata
catgatgtgaggaaggctttgcgtcgacacattaaattattcccacattctgccaaagcc
aagttgcatgagtcccgtcctttggggaattcgctaagagagttgattcaacaaagagaa
aagactcgtgagtgcttaaatcaggacctatcaacaaacaaaggcactggcagcaacacg
cttgaagaaaagaaagactttcctctgattctgaactctgatgatgctgactatataaac
accgagcctaatggggagtctcacgttgaagaaaacaataatgttgcagataggaagaag
ctctgtgagtcacagaatgatctgtctacgggacaaaagtcgaatgaaggtggtgaacgc
tctcgtgaagtaagcctgccaataaaaaacacgccgcctgaacctgggtttgtctctaaa
caagctcacttctcttgcagttcagtagatactgtgaaatctgatgctatagagatccaa
cccagtggctttcggagtcaccaaaaccaagagtttctcaggcaagctagtcgaaacagg
ttccagaggagagatttcaaccagaatcgtagagatcacaaacctcgttcacaggagaga
cctccccagatgtcgtatcctcctccagtcacaactggtcgtgggggttttaaccagctg
atgggtgtttctcctcgagacaatccctcagtctcacagagtctgcaaaaccagtgtcag
taccccatggttcaaccatctaatgcatatccccctcaagcccagattcctggacaccac
atgaatgtagcctcgtctgagaatccagcagcagtgcaaaactcattctcacagattcct
cagaaccaacatcaaggctctgcagctcaggttcaaccatccttcgcttatcctcagtct
cagattcctcagcatccagtgcaaagtaatgaccaaacagagggtcaagtgcagagctac
gaagcttataatcagatgtggcaacaatattactattacaattaccactactaccaacaa
caacaacagcaacagcttctgtctgaacaaccacaaccaaatcagaataatcctcacccg
caacaagatccgaatctcctctccaaacagtaccaaactcaagctggaactcagcacccg
caatctcagcatgtggatacacagcaacatagccaagaaccacaaaatcaacagcaaatt
ctataccaacaacaacaacaacaagagtggtttcaacagcagcaagagtatcatctctat
cttcagcaacaagagttgcaaggagaagcaaaaggtcacgaacagagaccctctgtgcca
caagtctccacaagggacagtgatatactacaaaagagtggagaatctggaggacatgaa
gtagaacattcttctgacacttccatcacttccatatga
DBGET
integrated database retrieval system
