Raphanus sativus (radish): 108856267
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Entry
108856267 CDS
T06014
Name
(RefSeq) uncharacterized protein LOC108856267 isoform X2
KO
K07573
exosome complex component CSL4
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108856267
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108856267
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
108856267
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
108856267
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GFIT
Motif
Pfam:
EXOSC1
ECR1_N
ECR1_N_2
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
108856267
NCBI-ProteinID:
XP_018485536
UniProt:
A0A6J0NN43
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Position
5:complement(28539596..28541461)
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AA seq
189 aa
AA seq
DB search
MTDIVTPGDVLGNVAEFKAGKGAYVNDKTIYASLTGSRRIVSSLPDSPDQRAIVEVTGHK
AHGLIPEPGSVVLARVTKVMARMASVDILCVGPKAVREKFAGIIRQQDVRATEIDKVDMH
QSFRPSDIVRAMVLSLGDSRAYYLSTAKNELGVVSAESAAGETMVPMSWIEMQCPLSGQT
EPRKVAKVG
NT seq
570 nt
NT seq
+upstream
nt +downstream
nt
atgacggacatagtaacgcctggagatgtacttgggaatgtggctgagtttaaagccggc
aaaggagcttacgtcaacgacaaaacaatctacgcttccctcactggatctcgtcggatt
gtttcttctcttcccgactctcctgaccagagagctattgtggaagttacgggtcacaag
gcacatgggcttattcctgagcctggttctgttgtcttagctagggtgactaaagttatg
gctaggatggcttctgttgatatcttgtgtgttggtcccaaggccgttcgtgaaaaattt
gctggcataatcaggcaacaagatgtaagagcaacagagattgacaaagttgatatgcat
cagtcttttcgtcctagtgacattgttagagccatggttctgtcccttggtgattcacgg
gcttactatttgtcaaccgctaagaatgagcttggtgtggtctcagcggagagtgctgct
ggtgaaaccatggttccgatgagctggatagagatgcaatgccctttgtcgggacaaacc
gagccaagaaaagttgccaaggttggctag
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