Raphanus sativus (radish): 108856518
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Entry
108856518 CDS
T06014
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108856518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108856518
Enzymes [BR:
rsz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
108856518
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108856518
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RRM_PARP14_2
Motif
Other DBs
NCBI-GeneID:
108856518
NCBI-ProteinID:
XP_018485844
UniProt:
A0A6J0NMG8
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Position
5:13306815..13309403
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AA seq
619 aa
AA seq
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MQLKMRRRFLSSLAASAGNSKTLNHRRWTVKQVTKSNFKSSLDEFRTSINSSDFVAISLL
NTGSYAAAWHRVSAIDTPQTSYLKAKYAAERYQIFQFALCPFSLHASNLTVHPYNFYLFP
RDELKLGMPSYSFSCQASRLTSMAREGFDFNTCIYEGISYLSREQESASKFLSGNPILPD
PITAPSSPSTVADTVFVGRIRSRVKNWRQSCLDSSSKTGDDDDLVSSLRKLVLGSEQYGS
RLCLTIDVCSERQVQLILEMLTEFSDDVVPLLTASKSRGTQAVRTVFMSSKEDKDLFKRE
LQDLEDEENRRVRGFREVVDLISSSQKPVVTQNYLSDFTSIHAKFLGPLPSNVDGFTRSL
SSAFPNVVNLSQLMKEICPLSNISNLPAALSSLNRFFAPVDVEVANHGCAVNPDEGNQMH
GQNVVMISQLFAKLSTIQKSYQSPAQSNEDLQDLDFEEHANSITSNDENVKVWSKNSRRV
SSENLVFVWGLSKKMTAAMLKKVLEKSSHAVFAQEFDVKYIDRSCAVVVFWESGSSETFL
REVNNEEQLVGCLREMVAEGLRVAGYETYRRACRLGFWEADLAEALDKTLESSETDLDSD
NKPSDIIWSSELAINFDEL
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgcagctcaaaatgcgaaggcgctttctttcttctctcgccgcttccgccggcaatagt
aaaaccctaaatcaccggaggtggactgtgaagcaggtcacaaaatccaacttcaaatcc
tctcttgatgagtttcgcacttccatcaactcatccgacttcgtagctatctccctactg
aacaccggctcctacgccgccgcctggcaccgtgtctccgccattgatacgccgcagacg
agttacttgaaggctaaatacgccgccgaacgctaccagatattccagtttgctctctgc
cctttctcccttcacgcctccaacctcaccgttcacccatataacttctatttgtttcct
cgagatgagttgaaattagggatgccttcttatagcttctcttgtcaagcttctcgttta
acatccatggctagagaagggtttgatttcaacacctgtatctatgaaggaatctcatac
ttgtccagagaacaagaatctgcgtccaagtttctctcagggaatccgatattacctgat
cccatcactgcaccttcttctccatccaccgtagctgataccgtctttgttggaaggata
aggtcacgcgtcaagaattggagacagtcttgtttagactccagctcaaagacaggagat
gatgatgatttggtgagctctctgaggaaacttgtgctggggagtgagcagtatggttca
aggctatgcttaactattgatgtctgcagtgagcgtcaagtgcaactcatcttagagatg
ttgaccgagttctctgatgatgttgtccctctactcaccgcttctaagagcagaggaaca
caagctgttcgtactgtcttcatgagttctaaggaagacaaggatctatttaagagagag
cttcaagatcttgaagatgaagagaacaggcgagttcgtggcttccgagaagtggttgat
ttgatttcttcttcacagaaacctgttgttacacagaattatcttagcgatttcacttcc
atccatgccaaattcttgggtcctctgccttctaatgttgatggcttcacccgttcactg
agctcagcttttcccaatgttgtgaatctcagtcaactcatgaaagaaatttgtccctta
agtaatataagcaatctacctgcagctttgtcctccttgaatcggttctttgctcctgtg
gatgtggaagtagcaaatcatggatgtgcggttaacccagacgaaggcaatcagatgcat
gggcagaatgttgtgatgatttctcagctttttgctaaactaagtaccatacagaaatcg
tatcaatcccctgctcaatcaaatgaagatcttcaagatttggattttgaagaacatgca
aattcaatcacctcaaacgatgaaaatgtcaaagtctggtcaaagaacagcaggagagtg
agctctgagaacttggtgttcgtatggggattgtcgaaaaagatgacagctgcaatgctg
aagaaagttctggaaaagtcgtcacacgctgtttttgcgcaagagttcgatgtaaaatac
atagacaggagctgtgcggttgtggtgttttgggagtcaggttcctcggagactttcctc
agggaggttaacaatgaagagcagcttgttggttgtttaagagagatggtcgcagaaggg
ctaagagtagcaggttatgagacttacaggagagcgtgtagattaggtttctgggaagcc
gacttggcagaagctctagacaaaacattggaatcttcagaaactgatcttgattcagac
aacaaaccatcagatattatttggtcgagtgagttagctatcaattttgatgagctatga
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