Raphanus sativus (radish): 108856665
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Entry
108856665 CDS
T06014
Name
(RefSeq) LOW QUALITY PROTEIN: phytochrome B-like
KO
K12121
phytochrome B
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
108856665
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HisKA
HATPase_c
PAS_4
PAS_8
PAS_9
PAS_3
Motif
Other DBs
NCBI-GeneID:
108856665
NCBI-ProteinID:
XP_056855617
UniProt:
A0A9W3CVH3
LinkDB
All DBs
Position
Unknown
AA seq
1108 aa
AA seq
DB search
MKSVSGAGRGRHHTESMSKAIQQQYTVDARLHAVFEQSGKSFDYSNSLKTTTYDSSSSSV
LAEHQITDYLSTIQRGGYIQPFGCMIAVEEPTFAIIAYSENAREMLGLLLTPHSVPILAM
GADLRSLFTHSSSLLLERAFLAPEITLLNPVWIHSKNTGKPFYAILHRIDVGVVIDLEPS
RTEDPALSISGAVQSQKLAVRAISRLQSLSTGGEEDIKLLCDTVVESVRDLTGYDRVMVY
KFHEDEHGEVVAESRREDLEPYVGLHYPATDIPQASRFLFKQNRVRMIVDCHAKPVLVVQ
DEKLTQSVCLVGSTLRAPHGCHSQYMANMGSNASLVMAVIINGNEEDESGRSFTRRLWGL
VVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSEKRVLRTQTLLSDMLLRDS
PAGIVTQSPSIMDLVRCDGAAFLHRGKYYPLGVAPSEAQIKDVVEWLLASHAGSTGLSTD
SLRDAGYPGAAGLGDEVCGMAVACITKRDYLFWFRSHAAKEVKWGGARHRPEDRDDGHRM
HPRSSFIAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKEAEADGAVQSCGGVGAVARE
MVRLIETAAAPIFAVDCGGRVNGWNAKIAELTGLSVEEAMGKSLVSDLIYKENEETVDKL
ISRALRGEEDKNVEVKLKTFSPDLQGKAVFVVGNACTRKDYLNNIVGVCFVGQDVTGEKI
VMDNFITLQGDYRAIVHSPNPLIPPIFAADENTCCLEWNTAMERLTGWSRGEVIGKLLVG
EVFGSCCRLRGLDALTKFMIVLHNAVGGQETEKFPLPFFDRNGKFVQALLTANKRVSLEG
KVVGAFCFLQIPSLEALTVERRQETECFTKEKELAYVCQVIKSPLSGLRFSNSLLEGTEL
NENQKQFLETSVSCEKQISRIVTDMDLERLENGSFELLREEFYLGSVINAVVSQAMFLLR
ERSVQLIREIPEEIKSIAVYGDQTRTQQLLAEFLLSIIRYAPSQEWVEIHLSQVSKQMVD
GSSSIRTEFRMACPGEGLPPELVSDMFHSSRWTSPEGLSLSVCRKILKLMNGEVQYIRES
ERSYFLIILELPVPPLSTASGDMMLLMS
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagtgtcagcggcgccggccgtggccgtcaccacacggagtcaatgagcaaagcc
atacaacaacagtacacagtcgacgcgagactccacgccgtcttcgaacaatcaggcaaa
tccttcgactactcaaactccctcaaaacgacaacgtacgactcctcctcctcctccgtt
cttgccgagcaccagatcaccgactatctctcgacgatccagcgcggcggctacatacag
cctttcggttgcatgatcgccgtcgaagagcccaccttcgccatcatcgcctatagcgag
aacgcgcgggagatgctaggcctcctcctcactccccactcagttcccatcctcgccatg
ggagcagacctccgctctctcttcacccactccagctctctcctcctcgaacgcgccttc
ttggctccagagatcacgctcctcaacccggtctggatccactccaagaacaccggcaag
cccttctacgcgatcctacacaggatcgacgtcggagtcgtcatcgatttagaaccatcc
agaaccgaagatccggctctctctatatccggagccgtgcagtcgcagaagctcgctgtt
cgcgccatctctcggttacagtctctctccaccggtggagaagaagacatcaagcttctc
tgcgacaccgtcgtggaaagcgtcagggacctgaccggatacgaccgtgtgatggtctac
aagtttcacgaagacgagcacggagaagttgttgcagagagtcggagagaggatctagag
ccttacgtcggcttacattatcccgccactgatatcccgcaagcgtcgcggttcttgttt
aaacagaaccgcgtccggatgatcgtcgattgtcacgctaaaccggttctcgtggtccaa
gacgaaaagctgactcagtctgtgtgtttggttggctctactcttagagctcctcacggt
tgccactctcagtacatggctaacatggggtctaatgcctctttagtgatggcggttata
ataaacggtaacgaagaagatgagagtgggagaagctttacgaggcggctttggggttta
gtcgtttgccaccacacctcctctcgctgcataccgttccctctgaggtacgcctgcgag
tttctgatgcaggcgtttggtttgcagctcaacatggagctgcagttagctcttcagatg
tcggagaagcgcgtgttgaggacgcagacgctgttatccgacatgcttctgcgtgactct
cccgcagggatcgtcacgcagagtcctagcatcatggacctggtgagatgcgacggcgcc
gcgtttctccaccgcgggaagtactatcctttgggcgttgctccgagcgaggctcagata
aaagacgttgttgagtggttgcttgcgagccacgccgggtcgaccggcttgagcactgat
agtttacgcgacgccgggtatccgggtgcggctggactaggcgatgaggtgtgcggtatg
gcggtcgcgtgcatcacgaagagagattatctcttctggttccgttcccacgcggctaaa
gaagtcaaatggggtggcgctaggcatcgtcctgaggatagagacgatgggcataggatg
catcctcgctcgtctttcatcgcgtttctcgaagttgttaagagcaggagtcagccgtgg
gagactgcggagatggacgcgattcattctctccagctgattctgagagactcttttaaa
gaagctgaggcagatggtgcggttcagagttgtggaggagtaggtgcggttgcgagagag
atggttagactcattgagacagcagctgcgcctatattcgctgtagactgtggaggacgt
gtgaatggatggaacgctaagattgcggagttgactggtctctctgttgaagaggctatg
gggaagtctttggtctctgatctaatatacaaagagaatgaagaaactgttgataagctc
atttctcgtgcgttgagaggggaggaggacaagaacgtggaggtgaagctgaagactttc
agccctgacttacaagggaaagcggttttcgtggttgggaatgcgtgtacgagaaaggac
tacttgaacaacattgtcggggtgtgtttcgttggacaggacgttaccggtgagaagatc
gttatggacaatttcatcaccttacaaggagactacagagccatcgtccacagtcccaac
cctttgattccgccgatctttgcggcagacgagaacacttgctgcctggagtggaacact
gcgatggaaaggctcaccggttggtctcgcggcgaagtgatcgggaaactgcttgttggt
gaagtgtttgggagctgttgcaggctcagaggtcttgatgcgttgaccaagttcatgatt
gtgttgcataatgcggtcggtggtcaggagactgagaagttccctttgccgttctttgat
cggaacgggaagtttgttcaagctctgttgactgctaacaagagggttagcctcgagggg
aaggtcgttggagctttctgtttcttgcagattccgagtcttgaggctttaacagtcgaa
agaaggcaggagacagagtgtttcacaaaggagaaagagctagcttacgtttgtcaggtg
ataaagagtcctttgagcggtttgcgtttctcaaactcgttgctggaaggtacggagttg
aatgagaatcagaaacagtttcttgaaacgagtgtttcttgcgagaagcagatctcgagg
attgtcactgacatggatcttgaaagacttgaaaacggttcgtttgagctgcttagagag
gagttttatctcggaagtgtcatcaacgcagttgtaagccaagcgatgttcttattaagg
gagagaagtgttcagctgatccgtgagattcctgaagagatcaaatcaatagctgtttat
ggagaccagacaaggactcaacagctattagctgagtttctgctgagtatcatccggtat
gcaccgtcacaagagtgggtagagatccatctaagccaagtttcaaagcaaatggttgat
ggttcctcctctatccgcacagaatttagaatggcgtgtccaggtgaaggcctacctcca
gagttggtcagtgacatgttccacagcagcaggtggacgagtcctgaagggttaagtcta
agcgtgtgtagaaagattctaaagctcatgaacggtgaggttcaatacataagagagtca
gaacgctcctatttcctcatcattctcgaactcccagttcctcctttatcaacagctagc
ggcgacatgatgttgttgatgtcatag
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