KEGG   Raphanus sativus (radish): 108857085
Entry
108857085         CDS       T06014                                 
Name
(RefSeq) ubiquitin-40S ribosomal protein S27a-3
  KO
K02977  ubiquitin-small subunit ribosomal protein S27Ae
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03010  Ribosome
rsz04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    108857085
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    108857085
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:rsz03011]
    108857085
   04121 Ubiquitin system [BR:rsz04121]
    108857085
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:rsz04147]
    108857085
Ribosome [BR:rsz03011]
 Ribosomal proteins
  Eukaryotes
   Small subunit
    108857085
  Archaea
    108857085
Ubiquitin system [BR:rsz04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   108857085
Exosome [BR:rsz04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   108857085
  Exosomal proteins of colorectal cancer cells
   108857085
SSDB
Motif
Pfam: ubiquitin Ribosomal_S27 Rad60-SLD Ubiquitin_2 Rad60-SLD_2 Dsc3_N Plexin_RBD DUF2604 UBL_UBAC1 TBK1_ULD Ubiquitin_5 Thioredox_PDIA6_C OTU1_UBXL
Other DBs
NCBI-GeneID: 108857085
NCBI-ProteinID: XP_018486517
UniProt: A0A6J0ML39
LinkDB
Position
5:28059516..28060180
AA seq 157 aa
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDGSGKVQRLRKE
CPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEGAEA
NT seq 474 nt   +upstreamnt  +downstreamnt
atgcagatcttcgtgaaaaccctaacgggtaagacgataaccctcgaggtcgagtcctcc
gacaccatcgacaacgtcaaggccaagatccaggacaaggaagggatccctccggaccag
cagcgactgatattcgccgggaagcagctggaagacggccgcactctcgccgactacaac
atccagaaggagtcgacgcttcatctcgtcctccgtctccgtggtggggccaagaagagg
aagaagaagacgtacaccaagccgaaaaagatcaagcacaagcacaagaaggtgaagctc
gcggtgctccagttctacaaggtcgacggatccggcaaggtgcagaggctgaggaaagag
tgccctaacgccacttgcggcgctggaacttttatggcgagtcacttcgatcgtcattac
tgtggtaagtgtgggctcacttacgtttaccagaaagagggagctgaggcatga

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