Raphanus sativus (radish): 108857288
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Entry
108857288 CDS
T06014
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit D
KO
K07466
replication factor A1
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03030
DNA replication
rsz03420
Nucleotide excision repair
rsz03430
Mismatch repair
rsz03440
Homologous recombination
rsz03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108857288
03420 Nucleotide excision repair
108857288
03430 Mismatch repair
108857288
03440 Homologous recombination
108857288
03460 Fanconi anemia pathway
108857288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rsz03000
]
108857288
03032 DNA replication proteins [BR:
rsz03032
]
108857288
03400 DNA repair and recombination proteins [BR:
rsz03400
]
108857288
Transcription factors [BR:
rsz03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
108857288
DNA replication proteins [BR:
rsz03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
108857288
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
108857288
MMR (mismatch excision repair)
108857288
DSBR (double strand breaks repair)
HR (homologous recombination)
108857288
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
DUF223
tRNA_anti-codon
Motif
Other DBs
NCBI-GeneID:
108857288
NCBI-ProteinID:
XP_018486750
UniProt:
A0A6J0NQL0
LinkDB
All DBs
Position
Unknown
AA seq
626 aa
AA seq
DB search
MQTSVTPDAISAVLSNPSFDSSSSDRSEIIVQVVDLKPIGNRYTFTANDGKTKVKAMFTA
SLTPEIISGKIQNLGLIRLLEFTVNDISSKSTKYFLVTKCEEVSSALDSEINLEGKSEEE
EEAGEAKRQKLDNSSVSDVVSTGITLKPKQESVAKSASQIITEQRGNVAPAARMSMTRRV
HPLVSLNPYQGSWTIKVRVTNKGVMRTYKNPKGEGCVFNVELTDEEGTQIQATMFNDAAR
KFYDMFQLGKVYYISRGSLKLANKQFKTVQNDYEMTLNENAEVEEASDEEMFVPETKFNF
VPIEELGMHVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIPKRDITLADESKRTVVVSLW
NNLATGIGQELLDMADKSPVIAIKSLKVGDFQGVSLSTISRSNVVINPESPEAKKLKSWF
DSEGKGTSMSSIGSGMSPSAKNGSWSMYTDRVPLSQITSNPSLGEGKPVFFSTRGYISFI
KPDQTMWYQACKTCSKKVTEAMDSGYWCEGCQKKDEECSLRYIMVVKVSDSTGEAWFSSF
NEEAEKIIGCSADELNKLRSEGGEVNEFQTKLKEATWSSHVFRISVTQNEYNGEKRQRIT
VKAVAPVDFAAESRFLLQDISKKNNA
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgcagacttcagtgaccccagatgctatctccgccgtattgtcaaacccatctttcgat
tcctcgtcttcagatcgatccgagatcatcgttcaagtggttgatcttaagcctatcggg
aaccgatacactttcactgcgaatgatgggaagacgaaggtgaaagcaatgtttacagct
tcattaacacctgagatcatttctgggaagatccagaatctgggacttattcgtctcctt
gagttcactgttaacgacatttcaagcaaatcaaccaaatacttccttgtgacaaaatgt
gaggaggtttcttctgcgcttgattctgagattaacttggagggtaagagtgaggaggag
gaggaggctggtgaggccaagaggcagaagctagataactcttccgtgagtgatgttgtc
tccactggaatcactttgaaacccaagcaggagtctgttgccaaatcggcttcccagata
atcactgaacagaggggaaatgttgcaccagctgcaagaatgtccatgactagaagagtt
catccacttgtgtccttgaatccctatcaaggaagctggaccatcaaagtccgagtcact
aacaagggagtcatgagaacctacaaaaaccctaagggagaaggatgtgtcttcaatgtc
gaactaactgatgaagaaggaactcaaattcaagccacgatgttcaatgatgctgcacgg
aagttttatgacatgttccagttgggaaaggtttattatatctctaggggatcacttaaa
cttgctaacaagcagttcaagacagttcagaatgattatgagatgacgctgaatgaaaac
gcagaggtggaggaagctagtgatgaggaaatgttcgttcctgagactaaattcaacttt
gtacccattgaagagttgggtatgcatgtgaatcagaaggagcttattgatctaattgga
gttgttcaaagtgtttcccctaccatgagtattagaaggagaactgacaacgagatgata
ccaaagagggatataactttggctgatgagtcaaagagaactgttgtggtgtcactgtgg
aacaacttggcaaccggcataggtcaagaactgctagacatggctgataagtctcctgtg
attgcaatcaagtctctcaaagttggagactttcaaggtgtttcattgtccaccatcagc
agaagcaatgtagtgataaatcctgaatcaccagaagctaaaaagcttaaatcttggttt
gattctgaaggcaaggggacatccatgtcttccattggctcagggatgagcccatctgct
aagaatggatcttggtctatgtatactgatcgagtcccactctctcaaatcactagcaac
ccatctctaggcgagggaaagcctgtgtttttcagcaccaggggttacataagcttcatc
aagccagaccagacaatgtggtatcaagcttgtaagacttgtagcaagaaagtaactgaa
gcaatggactctggttactggtgtgagggttgccagaaaaaggatgaagaatgcagccta
aggtacataatggtagtgaaagtctctgactcaacaggagaagcttggttttcctcattc
aacgaagaggcagagaagattattggatgttcagctgatgagctcaacaaactaagatca
gagggaggtgaagtgaatgaatttcagacaaagctgaaagaagcaacatggtcctctcat
gtcttcaggatcagtgtcactcagaatgagtataacggtgagaagaggcagaggataact
gttaaagcggtagctcctgttgattttgctgctgagtcaagatttttgctccaagacatc
tccaagaagaataatgcataa
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