Raphanus sativus (radish): 108857807
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Entry
108857807 CDS
T06014
Name
(RefSeq) probable polygalacturonase At3g15720 isoform X1
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Module
rsz_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108857807
Enzymes [BR:
rsz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
108857807
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
NosD
End_N_terminal
Beta_helix
Motif
Other DBs
NCBI-GeneID:
108857807
NCBI-ProteinID:
XP_018487323
UniProt:
A0A6J0NUB6
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Position
5:complement(6370144..6373004)
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AA seq
458 aa
AA seq
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MRLKLKTWILSFSVFALQIFTYSIALDVTQYGAVGDGVTDDSQAFLKAWEAVCGGAGDGQ
LIIPAGMAFMLQPLKFEGSCKSTPIVVQILGNLVASSRGKWKGDKDQWILFSDIEGLVVE
GNGEINGQGSSWWEHKGSSRPTALKFKSCNNLRLSGLTHVDSAMAHIHINGCNDVTISHL
RINAPESSPNTDGIDVAASSNVIIQDCVIATGDDCIAINSGTANIRISGIDCGPGHGISI
GSLGKDGEIASVEDVCVQNCNFRGTMNGARIKTWPGGSGYARRITFNRITLDNVENPIII
DQHYNNGDSDESTDDKSSAVEVSKVVYSNFVGTSRSEYGVNFRCSKRVPCTEIFMQDVKI
ETESSGMGQVAQGQCLNVRGGVSTLAVPGLECLALSTDMLSWGTMPEQACMLPQPSVQPN
TRPLQDPLWVYGSRAQRLGVYNVILTSLISFGFSYVLG
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgcgcttaaagttgaagacttggatcttaagtttctcagtgttcgctctccaaatcttc
acatattcgatagcattagatgttactcaatatggagctgttggagatggagttacagat
gattctcaggcgttcttgaaagcctgggaagctgtctgtggcggggcaggagatgggcag
cttatcattccggcaggaatggcatttatgttgcagcccttgaagtttgagggttcttgc
aaatcgacccctattgttgttcagattttgggcaatcttgttgcatcaagtagaggaaaa
tggaaaggagacaaagaccaatggattctcttctcagacatagaagggcttgtggttgaa
ggtaacggcgaaataaacggccagggttcgagctggtgggaacacaaaggcagttctaga
ccaacagcattgaagttcaagagctgcaacaatcttagacttagtggcttaacgcacgta
gatagtgcaatggcacacattcacataaacggttgcaacgatgtcaccatctcacatctc
cggataaatgcaccagaatcaagtcctaacaccgatggtatcgatgtagccgcttcatcc
aatgttatcatccaggactgcgtaatcgccactggtgacgattgcattgcgattaactcg
gggacggctaacatcagaatttccggtatagactgcggaccaggtcatggaataagcata
ggaagcttagggaaagatggagagatagcttcagtagaggatgtttgtgtccaaaactgt
aactttagaggaactatgaatggggctcggattaaaacctggccgggaggatcaggttac
gcaagaaggattactttcaaccgaattactctagataatgtcgagaatccaatcattatt
gatcagcattacaacaatggagattctgatgaatccacagatgataagtcgtcggcggtg
gaagtgagcaaagttgtgtatagtaacttcgtggggacgtccagatctgagtacggtgtt
aacttcaggtgcagcaagagagtaccatgcacagagatttttatgcaagatgtgaaaata
gaaacggaatcgtcaggaatgggacaagtagcgcaaggacagtgtttaaacgtgagaggt
ggagtgtctacacttgcggtaccaggtttagagtgtttagcactttctacagatatgttg
tcatgggggacaatgccggaacaagcttgtatgttgccgcagccatcagtgcaaccgaat
acacgaccgttgcaagatccattatgggtttatggaagcagagcacaacggctgggagta
tataatgtcatattaacttcattaatctcttttggttttagttatgttttaggttag
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