Raphanus sativus (radish): 108858208
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Entry
108858208 CDS
T06014
Name
(RefSeq) LOW QUALITY PROTEIN: probable pectate lyase 15
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108858208
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108858208
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
108858208
NCBI-ProteinID:
XP_056866744
UniProt:
A0A9W3DSE8
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Position
5:complement(11666798..11668573)
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AA seq
326 aa
AA seq
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MGFGSNATGGRDGRFYVVTDPTDEDMEYPKPGTLRHAVIQVEPLWIIFKRDMVITLKQEL
IMNSYKTIDARGANVHIANGACITIQGITHVIVHGLHIHDCIRTGNAMVRSSPSHYGMRN
MSDGDAVSIYASSHIWIDHNSLSKCADGLVDVVIGSTAVTISNNHLTHHNEVMLLGNNDL
YTQDKIMKVTIAYNHFGEGLRQRMPRCRHGYFHVVNNDYTHWEMYATGGSANPTINSQGN
RYAAPKNRFAKEVTKRVRAEKSEWKKWNWRSEGDMLVNGAFFRQSGGVASASYESASSLA
AKPASMVDLITSTAGALGCRRGKPCY
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgggttttgggagcaacgccaccggtggtcgtgacgggcgtttctacgtcgtcactgat
ccaaccgacgaggacatggagtatcccaagccaggtactctacgccacgcagttatccaa
gttgagccactgtggattatcttcaaaagagatatggtgataacgttgaaacaagagctg
attatgaacagttacaagaccattgatgctcgtggtgctaacgttcacatagccaatggt
gcttgcatcaccattcagggtataacccacgtcatcgttcatggtctgcacattcatgat
tgtataagaactgggaatgcaatggtcagaagctcgccttctcactatggaatgaggaat
atgtctgatggtgatgctgtttctatatatgcgtcaagtcatatctggattgaccacaac
tctctctctaagtgtgctgatggtcttgtggatgttgtcataggttctactgcagtcaca
atttccaataaccatctcacacaccacaatgaggtcatgttgctaggaaacaatgatttg
tacacacaagacaagatcatgaaagtaactattgcgtataaccattttggagagggactt
agacagagaatgccaagatgtaggcatggatacttccatgtggtgaacaacgattacacg
cattgggaaatgtacgctactggaggaagcgcaaacccaactataaacagtcaaggcaat
agatatgctgctcccaagaaccgctttgcaaaggaggttacgaagagggtgagggccgag
aaaagtgagtggaagaagtggaactggagatcagaaggagacatgctagtgaatggagcg
tttttcagacaatcagggggagtagcatcagctagctatgaaagtgcctcgagcttagca
gctaaaccagcttctatggtcgacttaatcacttctactgcaggtgcacttggttgccgc
agaggcaaaccttgctactaa
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