Raphanus sativus (radish): 108858217
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Entry
108858217 CDS
T06014
Name
(RefSeq) LOW QUALITY PROTEIN: chaperonin CPN60, mitochondrial
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108858217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108858217
03110 Chaperones and folding catalysts [BR:
rsz03110
]
108858217
03029 Mitochondrial biogenesis [BR:
rsz03029
]
108858217
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rsz04147
]
108858217
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
108858217
Messenger RNA biogenesis [BR:
rsz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
108858217
Chaperones and folding catalysts [BR:
rsz03110
]
Heat shock proteins
HSP60 / Chaperonin
108858217
Mitochondrial biogenesis [BR:
rsz03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
108858217
Exosome [BR:
rsz04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108858217
Exosomal proteins of other body fluids (saliva and urine)
108858217
Exosomal proteins of breast cancer cells
108858217
Exosomal proteins of colorectal cancer cells
108858217
Exosomal proteins of bladder cancer cells
108858217
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
108858217
NCBI-ProteinID:
XP_056841640
UniProt:
A0A9W3BQP4
LinkDB
All DBs
Position
5:complement(11986882..11990196)
Genome browser
AA seq
543 aa
AA seq
DB search
MGNSLVREICLAKEIKFGVEARALMLKGVEELADAVRVTMGPKQSWGAAPKVTKDGVTVA
KSIEFKDKVKNVGATLVKQVANATNDVAGDGTTCATVLTRAIFTEGCKSVAAGMNAMDLR
RGISMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMERVGKEGVITI
QDGKTLINEFEVVEGMKLDRGYTSPYFITNQKTQKCELEEPLILIHEKKISSINSIVXVL
ELAMKRQRPLLIVSEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANLQDLAALTG
GEVITDELGMNLEKVDLGMLGTCKRVTVSKDDTVILDGAGDKTAIEERCEQIRSAIELST
SDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGILPGGGV
ALLYAARELEKLPTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVIVGKLLEQDNTDL
GYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLLTTTEAVVVELPKDESEAAGMGG
MDY
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgggtaactctctggtacgagagatttgtcttgcgaaagagatcaagtttggtgttgaa
gctcgtgctttgatgcttaagggtgttgaagagcttgccgatgctgttagggtcactatg
ggtcccaagcaaagttggggagctgctcctaaagtgactaaagatggtgtcaccgttgct
aaaagcattgagttcaaggataaagtcaagaacgttggtgccactcttgtcaagcaagtt
gctaatgctactaatgacgttgctggtgatggtactacttgtgctactgtactcaccagg
gctatattcacggaaggttgcaagtcagttgccgcagggatgaacgctatggacctaagg
cgaggtatttccatggcggttgatgctgtggtgacaaaccttaaaagcagggctaggatg
atcagcacatctgaagagattgctcaggttgggaccatttctgcaaacggagagagggag
attggtgaactgatcgctaaggctatggagagggttggcaaagaaggtgtaatcacaatc
caagacggaaagacattgattaacgagtttgaagttgtagaagggatgaagctggacaga
ggttatacatccccttattttatcaccaatcagaaaacccaaaaatgtgaactggaagag
cctctaattcttatccatgagaagaagatctcctccatcaactccatagtttaagtgtta
gagttggctatgaagagacaaagaccgctattgattgtgtctgaggatgtagaaagtgaa
gctcttgcaactcttatccttaacaagctacgtgctggaattaaggtttgtgccattaag
gcccctggctttggagaaaatagaaaggccaatttgcaagaccttgctgcccttactggt
ggagaggtaatcacggatgagctgggcatgaatctggagaaggtggacttgggcatgcta
gggacctgcaaaagagttactgtctccaaggacgacactgttattcttgatggagccggt
gacaagacagccattgaggaaagatgtgagcagataaggtcagcaattgaactgagcact
tcagattatgacaaggagaaactgcaagaaaggttggctaagctctctggaggagttgca
gtattgaagattgggggtgcaagtgaagctgaagtaggtgagaagaaagacagagtgaca
gatgctttgaatgccactaaagcagctgttgaagagggtattttgccaggaggtggtgtg
gctcttctatatgcagcgagggagttggagaaacttccaacagccaacttcgaccagaag
attggtgtgcagatcattcagaacgctttgaagacccctgtgcacacgattgcttcaaat
gctggagtggaaggtgctgttattgttggcaaactcttggagcaagataacacagacctt
ggttatgatgctgctaaaggtgaatatgtggatatggtgaaagctggtatcatagatcct
ctgaaagtgatcaggaccgctttggttgacgctgcgagtgtgtcgtctctgttgacaaca
actgaagcagtagtggtggagcttcccaaagacgaaagcgaggcagcaggcatgggtgga
atggattattaa
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