Raphanus sativus (radish): 108859087
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Entry
108859087 CDS
T06014
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108859087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108859087
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108859087
mRNA degradation factors
5'-3' decay
Decapping complex
108859087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
WD40_Prp19
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_RIG_2nd
Beta-prop_EML_2
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
108859087
NCBI-ProteinID:
XP_018488435
UniProt:
A0A6J0NVI0
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Position
5:4968969..4974949
Genome browser
AA seq
1328 aa
AA seq
DB search
MASSPGNTNPNNPPPFDIIGILFKPSSSPFPTPPASYPPPAGPFLHNQYNHHQQQPYAPP
PPPQQQQQEVVPSSATNLHQQRSLPFPSPPLNLQSPRTNHNPGTHILALLNNNSNGGGGG
AVDPPNQLNQNEIRSFPSGPLRVPSCKLPRGRRLSGEHAAYDVDVRLHGEIQPQLEVTPI
TKYGSDPQLVVGRQIAVNKIYICYGLKGGNIRVLNINTALRALFRGHSQRVTDMAFFAQD
VHLLASVSLDGKVFVWKISEGSEGDDDPQITGKIALALQILGHEDTKHPRVCWHSHKQEI
LVVSIGKHVLLIDTTKVGRGEVFSAEAPIQCHLDKLIDGVKIVGKHDGEVTDLSMCQWMI
TRLVSSSVDGTVKIWQDFKAQPVAVLKPHDGHPVNSATFVTSPERSDHVILVTGGPLNRE
MKIWIPSGEEGWLLPADSESWNCTQKLDLKSSIEPRVEEAFFNQVIALSEAGLLLLANAK
RNAIYAVHLDYGSSPADTRMDYLSEFTVTMPILSFVGTNDPPEEPMVKVYCVQTQAIQQY
TLDLCLCLPPPTEENVGLEKSDSSVSREANLVEGMSKSSGMKLTDLPSVDSVPKPSILVN
RSKGAITSSYPAGSAPGETSAPVTVPSSGEPRTSGLLSDTSATGSEYATSPQIPPSPRLS
SKLSGYQTPVDVIEPILPPHQLGGQGPSEYSVAVGEKNLEESSRSKDKDVTPDDDVSGMR
SPQAFFKHPTHLVTPSEFLMRMSSTEGSITTEEKRDRDANIQDVNIDSRDTEVEVKEVGE
SSSTQNGEINYNDETEHRTSVNKEKIFYSQTSNLSTEMARDCYPSTEPDESNAYEQSVLA
GDNLDSRDVSGKLLESVSSIGLPQSAATNSKGKKQKTKTSQNPGLSSTSSNVANLADTYN
EQTQSSSQPILAFQETMNQIMVSQKEMSRQLSNAVNGSVAKEGKRLEVALGQMIERSSKS
NADALLARLQEETVKGKAMRDNSQQIVNAITNFVSKELNAFEKTTKKELATIVPAIARAS
TAVIEKTVSSSITESFQRGLGDKAVNQLDKSVNSKLEATITKQILTQFQTSGRQALQEAL
RSGLEASLIPSFERSCKTMFEKVDTAFQKGMAEHTNAAQQRFEAGHSQLAHTLKETITSA
SSVTQALSRELAESQRNHLVLAAAGANSSGSNTLVSQRSGGPLGALLEKVEADPRTELSR
LISERKYEESFTSALQKSDVSIVSWLCSQVDLHGLLAMNPLPLSQGVLLSLLQQLACDIS
KDTSRKLAWMTDVVAAINPSDPMVAAHGRPIFEQVYQILHHHRSVPGSDVSATRLIMHVI
NSMLMACK
NT seq
3987 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgtcacctggtaacacaaaccctaacaatcctccaccgttcgatatcatcggt
atactcttcaaaccctcatcgagccctttcccgacgccgccggcgtcttaccctcccccc
gcaggtccgttccttcacaaccagtacaatcatcatcagcagcagccctacgctcctcct
cctccgccgcaacaacaacagcaagaggtcgtgccttcctccgcgactaacctccaccaa
cagagatcactccctttcccctcgccgcctcttaatctccagtcgccgcgcaccaatcac
aaccccggaacgcacatcctggctctcctcaacaataatagcaacggcggtggaggcggc
gccgtagatccgccgaatcagctgaatcagaacgagatccggtcgtttccttcgggtcct
cttcgtgtcccgagctgtaagcttcccagggggaggcggttgagcggggagcacgcggcg
tacgatgttgacgtgaggttacacggcgagattcagccgcagctagaggtgactccgatt
actaaatacgggtcggatcctcagctggtagtgggtcgccagatcgctgtgaacaagatc
tacatttgctatggattgaaaggaggaaacattcgtgttcttaatattaacaccgcttta
agagctttgttccgaggccattctcagagagtgacagatatggccttctttgctcaagat
gttcatctcttggctagcgtaagcttggatgggaaggttttcgtgtggaagatatctgaa
gggtctgagggagatgatgatccccagataactggaaagattgctcttgctcttcagata
cttggtcatgaagacaccaagcatccacgtgtttgttggcattcccataaacaggaaatt
ttggtggtttcaattggtaaacacgttctcctgatcgatactactaaagttggcagaggt
gaagtcttctcggctgaggctcctattcagtgccaccttgataaattgattgacggtgtt
aagattgttggcaagcacgatggtgaggttacagatttatccatgtgccaatggatgatc
acacgccttgtttcctcttccgttgatggcacggttaagatatggcaagatttcaaggca
caaccagttgcagttctgaaacctcatgatggccatccggtcaattcggcaacatttgtg
acatcccctgagagatctgatcacgtcatactcgtcactgggggtcctcttaatcgagag
atgaagatttggatcccatctggagaagaagggtggctcctaccagctgattctgagtca
tggaattgcactcagaaactggatttgaaaagttcaattgagccacgagtggaggaggcg
tttttcaaccaagtcatagcgttatctgaagcaggcctcctcttgcttgcaaatgcgaaa
aggaacgccatatatgctgtgcatttggactatggctcatctccagctgatacaaggatg
gactacttgtctgagtttacagtcactatgccgatattgagttttgttgggacaaatgat
cctccagaagaacctatggttaaggtttattgtgtgcagacgcaagcaatccagcagtat
acattagacttatgcttgtgcttgcctcctcctacagaggagaatgtgggtttggagaag
tcagattctagtgtttcgcgggaggcaaatctggttgaaggcatgtcaaaatcatctgga
atgaagcttacagatttaccttcagttgattcagttcctaagccatctattttagtgaat
agatcgaaaggtgctattacttcgagttatccggctggttctgcacctggggagacgtca
gcaccggtaactgttccatccagcggtgagcctagaacttctgggctgctttctgacacc
agtgctactgggtcggaatatgctacttcacctcagattcctccaagtcccagactatca
agtaaactttctggctatcagactcctgtagatgttattgagccaatactaccacctcat
caactcggtggccaaggaccttctgaatattctgttgctgttggagaaaaaaatttggaa
gaaagctcaagaagcaaggacaaagatgttacacctgatgatgatgtgtctgggatgcga
agcccacaagctttcttcaagcaccctactcatcttgtaactccttcggagtttttgatg
cgcatgtcgtccactgaaggctccattactactgaagagaaaagggatagggatgcaaat
attcaggatgtgaatattgattcaagagacacagaagttgaggtaaaagaagtaggtgaa
tcaagttcgacgcagaatggggaaatcaattacaatgacgaaactgagcatcgcacttca
gtgaataaagaaaaaatcttttactcacagacttcgaatcttagcactgaaatggcaaga
gactgttatccaagtacagagcctgatgaatctaatgcttatgaacaatctgtactagct
ggggataatcttgactcgagagatgtgtctggaaagcttcttgaatcggtttcatctatt
gggcttccacagtcagccgctacaaatagcaaagggaagaaacagaagaccaaaacctca
cagaatcccggattgtcatctacatcctcaaatgttgctaatctggctgatacctacaat
gagcaaactcagagctcaagccaacctatcttagctttccaagaaacaatgaatcagata
atggtttcacagaaggaaatgtcgagacaactgtccaatgctgtcaatggctctgtcgct
aaagaaggtaaaagactagaagtggctttagggcaaatgattgagagatcgagcaagtca
aatgctgatgctctattggcccgcttacaagaggagaccgttaagggaaaggcaatgcgt
gacaattcacagcaaattgtgaacgcaataacgaacttcgtgagcaaagagttaaacgca
tttgaaaaaacgacaaagaaggagcttgctacaattgttccagccatagctcgtgcatca
acagcagttattgagaaaaccgtatcctcttcaatcacggaatccttccagaggggactt
ggtgacaaagcagtcaatcagcttgacaaatctgttaattcaaagctggaggcaaccata
actaagcaaattctaacccagtttcagacatctggcaggcaagccctccaggaagctctt
aggtcgggtcttgaggcctcactcataccttccttcgagaggtcatgcaagaccatgttt
gagaaagtggacacggctttccagaaaggaatggccgagcacacaaacgcagcacaacaa
cggtttgaagctggacactcccagcttgctcatactttaaaggaaaccattacttctgcc
tcgtcagttactcaagccttgagccgtgaattagcggagagccaaaggaatcacttagtt
ctcgcagccgctggagcaaattctagtggatcaaacaccttggtttctcaacgaagtggt
ggacctttgggtgctcttcttgaaaaggttgaagcagacccaagaacagaactatccagg
ttgatatctgaacgcaaatacgaagaatcttttacttcagctttacagaaaagcgacgtc
tccatagtatcatggctttgctcacaggtggatctgcatggactattggcgatgaatccg
cttcctctgagccaaggcgtgcttctgtcattactgcagcagctagcctgcgacatcagc
aaggacacatcccgtaagcttgcgtggatgactgatgtggttgcagcaattaacccatca
gacccgatggtagcggcccacggtcggccaatctttgagcaagtgtatcagattctgcac
caccaccgtagcgtaccaggcagcgacgtctctgccacaagacttataatgcatgtgata
aactccatgcttatggcctgcaaatga
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