Raphanus sativus (radish): 108859088
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Entry
108859088 CDS
T06014
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108859088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108859088
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108859088
mRNA degradation factors
5'-3' decay
Decapping complex
108859088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
WD40_Prp19
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_RIG_2nd
Beta-prop_EML_2
Beta-prop_TEP1_C
DUF445
Motif
Other DBs
NCBI-GeneID:
108859088
NCBI-ProteinID:
XP_018488436
UniProt:
A0A6J0NWA8
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All DBs
Position
5:4951772..4957733
Genome browser
AA seq
1322 aa
AA seq
DB search
MASSPGNTNPNNPPPSPFPTPPASYPPPIGPFLHNQYNHHQQQPYAPPPPPQQQQQEVVP
SSATNHLQQQRSLPFPSPPLNLQSPRTNHNPGTHILALLNNNSNGGGGGATVASQDPPNQ
LNQNEIRSFPSGPLRVPSCKLPRGRRLSGEHAAYDVDVRLHGEIQPQLEVTPITKYGSDP
QLVVGRQIAVNKIYICYGLKGGNIRVLNINTALRALFRGHSQRVTDMAFFAQDVHLLASV
SLDGKVFVWKISEGSEGEDDPQITGKIALALQILGHEDTKHPRVCWHSHKQEILVVSIGK
HVLLIDTTKVGRGEVFSAEAPIQCHLDKLIDGVKIVGKHDGEVTDLSMCQWMITRLVSSS
VDGTVKIWQDFKAQPVAVLKPHDGHPVNSATFVTSPERSDHVILITGGPLNREMKIWIPS
GEEGWLLPADSESWNCTQILDLKSSIEPRVEEAFFNQVIALSEAGLLLLANAKRNAIYAV
HLDYGSSPADTRMDYLSEFTVTMPILSFVGTNDPPEEPMVKVYCVQTQAIQQYTLDLCLC
LPPPTEENVGLEKSDSSVSRQANLAEGMSKSSGMKLTDLPSVDSVPKPSILVNRPKGAIT
SSYPAGSAPGETSAPVTVPSSGEPRTSGLLSDTSATGSAYATSPQLPPSPRLSSKLSGYQ
TPVDVIEPILPPHQLGGQGPSEYSVAVGEKKFEESSRSKDKDVTPDDDVSGMRNPQAFFK
HPTHLVTPSEFLMRVSSTEGSITTEEKRDRDANIQDVNIDSRDTEVEVKEVGESSSTQNG
EINYNDETEHRTSVNKEKIFYSQTSNLSTEMARDCYPSTESGESKAFEQSVQAGDNLDSR
DVSGKLPETVSSIGLSQSAATNSKGKKQKSKISQGPGLSSTSSNVANLADIYNEQTQSSS
QPILAFQETMNQIMVSQKEIPRQLSNAVNGSVAKEGKRLEVALGRMIERSCKSNADALWA
RLQEEIVKNEKAMRDHSQQIVNAVTNFVSKELNAMCEKTIKEFATIVPAIARALVPAIEK
TVTSSITESFQRALSDKAVNHLDKSVNSKLEATIMKQFQTQFQTSGRQALQEALRSGLEA
SVIPSFERSCKTMFEQVDTAFQKGMAEHTNAAQQRFDGGHSPLAHTLKETITSATSVTQA
LSRELAESQRNRLALAAAGANSSGSNALVSQRSSGPLGAILEKVEADPIAELSRLISERK
YEESFTSALQRSDVSIVSWLCSQVDLRGLLAMNPLPLSQGVLLSLLQQLACDISKDTSRK
LAWMTDVVTAINPSDPMVAAHGRPIFEQVYQILHHHRNVPGSDVSATRLIMHVINSMLMA
CK
NT seq
3969 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcttcacctggtaacactaaccctaacaatcctccaccgagccctttcccgacg
ccgccggcgtcttaccctccccccataggtccgttccttcacaaccagtacaatcatcat
cagcagcagccctacgctcctcctcctccgccgcaacaacaacagcaagaggtcgtgcct
tcctccgcgactaaccacctccaacaacagagatcactccctttcccctcgccgcctctt
aatctccagtcgcctcgcaccaatcacaatcccggaacgcacatcctggctctcctcaac
aataatagcaacggcggtggaggaggcgccaccgtggccagccaagatccgccgaatcag
ctgaatcagaacgagatccggtcgtttccttcgggtcctcttcgtgtcccgagctgcaag
cttcccaggggaagaagattgagcggggagcacgcggcgtacgatgttgacgtcagatta
cacggagagattcagcctcagctagaggtgactccgattactaaatacgggtcggatcct
cagctggtagtgggacgccagatcgcggtgaacaagatctacatttgctatggattgaaa
ggaggaaacattcgtgttctcaatattaacaccgcacttagagctttgttccgaggccat
tctcagagagtgacagatatggccttctttgcccaggatgtccatctcttggctagcgta
agcttggatgggaaggttttcgtgtggaagatatctgaagggtctgagggagaagatgat
ccccagattactggaaagattgctcttgctcttcagatacttggtcatgaagacaccaag
catccacgtgtttgttggcattctcataaacaggaaattttggtggtttcaattggtaaa
cacgttctcctgattgatactactaaagttggcagaggtgaagtcttctcggctgaggct
cctattcagtgccaccttgataaattgattgacggtgtaaagattgttggcaagcacgat
ggagaggttacagatttatccatgtgccaatggatgatcacacgcctcgtttcctcttcc
gttgatggcacggttaagatttggcaagatttcaaggcacagccagttgcagttctgaaa
cctcatgatggccatccggtcaattcggcaacatttgtgacatcccctgagagatctgat
cacgtcatactcattactgggggtcctcttaatcgagagatgaagatttggatcccatct
ggagaagaagggtggctcctaccagctgattctgagtcatggaattgcactcagatactg
gatttgaaaagttcaattgagccacgagtggaggaggcgtttttcaaccaagtcatagca
ttatctgaagcaggcctcctcttgcttgcaaatgcgaaaaggaacgccatatatgctgtg
catttggactatggctcatctccagctgatacaaggatggactacttgtctgagtttact
gtcactatgccgatattgagttttgtagggacaaatgatcctccagaagaacctatggtt
aaggtttattgtgtgcagacgcaagcaatccagcagtatacattagacttatgcttgtgc
ttgcctccgcctacagaggagaatgtgggtttggagaagtcagattctagtgtttcgcgg
caggcaaatctggctgaaggcatgtcaaaatcatctggaatgaagcttacagatttacct
tcagttgattcagttcctaagccatctattttagtgaatagaccgaaaggtgctattact
tcgagttatccggctggttctgcacctggggagacgtcagcaccggtaactgttccatcc
agcggtgagcctagaacttctgggctgctttctgacaccagtgctactgggtcggcatat
gctacttcacctcagcttcctccaagtcccagactatcaagtaaactttctggctatcag
actcctgtagatgttattgagccaatactaccacctcatcaactcggtggccaagggcct
tctgaatattctgttgctgttggagaaaaaaaatttgaagaaagctcaagaagcaaggac
aaagatgttacacctgatgatgatgtgtctgggatgcgaaacccacaagctttcttcaag
caccctactcatcttgtaactccttcggagtttttgatgcgcgtgtcatccactgaaggc
tccattactaccgaagagaaaagggatagggatgcaaatatccaggatgtgaatattgat
tcaagagacacagaagttgaggtaaaagaagtaggtgaatcaagttcgacgcagaatggg
gaaatcaattacaatgacgaaactgagcatcgcacttcagtgaataaagaaaaaatcttt
tactcacagacttcgaatctcagcactgagatggcaagagactgttatcctagtacagag
tctggggaatcaaaagcttttgaacagtctgtacaagctggggataatcttgactccaga
gatgtgtctggaaagcttcctgagacggtttcatctattgggctttcacagtcagccgct
acaaatagcaaagggaagaaacagaagtccaaaatctcacagggtcccggattgtcatct
acatcctcaaatgttgctaatctggctgatatctacaatgagcaaactcagagctcaagc
caacctatcttagctttccaagaaacaatgaatcagataatggtttcacagaaggagata
ccgagacaactctccaatgctgtcaatggctctgtcgctaaagaaggtaaaagactagaa
gtggctttagggcgaatgattgagagatcctgcaagtcaaatgcggatgctctttgggcc
cgcttacaagaggagatcgttaagaatgaaaaggcaatgcgggaccattcacagcaaatt
gtgaatgcagtgacaaacttcgtgagcaaagagttaaacgcaatgtgtgaaaaaacgata
aaggagtttgctacaattgttccagccatagctcgtgcattagttccagctattgaaaaa
actgtaacttcttcaatcacggaatccttccagagggcacttagtgacaaagcagtcaat
catcttgacaaatctgttaattcaaagcttgaggcgaccataatgaagcaatttcaaacc
cagtttcagacatctggcaggcaagccctccaggaagctcttaggtcggggctggaggct
tcagtcataccttccttcgagaggtcatgcaagaccatgtttgagcaagtagacacagcc
ttccagaaagggatggccgagcacacaaacgcagcccagcaaaggtttgacggtgggcac
tccccgcttgctcatacattaaaggaaaccattacctctgcgacgtcagttactcaagcc
ttgagccgtgaattagcggagagccaaaggaatcgcttagctctcgcagctgctggagca
aattctagtggatcaaacgccttggtttctcaacgaagtagtggacctttgggtgctatt
cttgaaaaggttgaagcagacccaatagcagaactatccaggttgatatccgaacgcaaa
tacgaggaatcttttacgtcagctttacaaagaagcgatgtctccatagtatcatggctt
tgctcacaggtggatctgcgtggactattggcgatgaatccacttcctctgagccaaggc
gtacttctgtctttgctgcagcagctagcctgcgacatcagcaaggacacgtcccgtaag
cttgcgtggatgactgatgtggttacagcaattaacccatcagacccgatggtagcggcc
cacggtcggccaatctttgagcaagtgtatcagattctgcaccaccaccgcaacgtacca
ggcagcgacgtctctgccacaagacttataatgcatgtgataaactccatgcttatggcc
tgcaaatga
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integrated database retrieval system
