KEGG   Raphanus sativus (radish): 108859282
Entry
108859282         CDS       T06014                                 
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03030  DNA replication
rsz03410  Base excision repair
rsz03420  Nucleotide excision repair
rsz03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    108859282
   03410 Base excision repair
    108859282
   03420 Nucleotide excision repair
    108859282
   03430 Mismatch repair
    108859282
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rsz03032]
    108859282
   03036 Chromosome and associated proteins [BR:rsz03036]
    108859282
   03400 DNA repair and recombination proteins [BR:rsz03400]
    108859282
DNA replication proteins [BR:rsz03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    108859282
  DNA Replication Termination Factors
   ELG1-RFC complex
    108859282
Chromosome and associated proteins [BR:rsz03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    108859282
DNA repair and recombination proteins [BR:rsz03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     108859282
  Check point factors
   HRAD17(Rad24)-RFC complex
    108859282
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_22 Rad17 RuvB_N Mg_chelatase AAA_11 AAA_16 AAA_5 AAA_14 ResIII DEAD SLFN-g3_helicase AAA_24 nSTAND3 PhoH AAA_28 AAA_19 AAA_7 AAA_30 AAA_2 RNA_helicase Parvo_NS1 AAA_assoc_2 AAA_25 DUF815 NPHP3_N IstB_IS21 TIP49 AAA_18 bpMoxR NB-ARC
Other DBs
NCBI-GeneID: 108859282
NCBI-ProteinID: XP_018488676
UniProt: A0A6J0NWP3
LinkDB
Position
1:9554419..9557909
AA seq 339 aa
MAPVIQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSSNRQGGYPCPSFKIII
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
NRILHICNEEGLNLGGEALSTLSIISQGDLRRAITYLQSGARLFGSTITSTDLLNVSGVV
PLEIVKRFFTACRSGDFDIANKEVDNIVAEGYPASQIINQLFDIVVEAGDDITDNQKAKI
CKCLAETDKRLVDGADEYLQLLDVASNTITALSEMAQDY
NT seq 1020 nt   +upstreamnt  +downstreamnt
atggcgccagttattcagagctcacaaccatgggttgagaaataccggccgaagcaagtg
aaggacgtggcgcatcaggaggaggtggttcgagtactcaccaacactctcgagactgct
aactgtccgcacatgctcttttatggaccaccaggaaccgggaaaaccactaccgcactt
gccatcgcccaccagctatttggacctgagttgtacaagtctagggtgttggagctgaat
gcaagtgatgacagagggattaatgttgttcggacgaagatcaaggattttgctgctgtt
gctgttgggtccagtaaccgtcaaggtggttatccttgcccatcgtttaagatcattatc
ctagatgaggctgattcgatgacggaagatgctcagaacgccttgaggcgcacaatggaa
acttactccaaagtcaccagattcttcttcatatgtaattatatcagcaggatcatagag
ccccttgcttcaagatgtgccaagttcaggtttaaaccactttctgaagaagtcatgagt
aaccgtatcttgcatatttgtaatgaagaaggtctcaaccttggtggagaggctctttca
actttgagtatcatatcacaaggtgatctccgtagggccatcacgtatctgcagagtggt
gctcggttgtttggatcaacaataacttcgacggatttactcaatgtgtctggggtagtc
cctctggagatagtgaagagattttttactgcatgcagaagtggtgatttcgatattgca
aacaaggaagtggacaacatagttgcagaaggatatcctgcatctcaaatcatcaatcag
ttatttgatatagtcgttgaagctggtgatgacataacggacaatcaaaaggctaagatc
tgcaaatgtctagctgaaacagataagcgacttgtagatggtgcggatgagtacctgcag
cttctggacgtggcaagcaatacaattactgcactctcagaaatggctcaagactactaa

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