Raphanus sativus (radish): 108859346
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Entry
108859346 CDS
T06014
Name
(RefSeq) sm-like protein LSM1B isoform X1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108859346
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108859346
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108859346
mRNA degradation factors
5'-3' decay
Lsm complex
108859346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
108859346
NCBI-ProteinID:
XP_018488742
UniProt:
A0A6J0NVC3
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Position
5:5366631..5368300
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AA seq
129 aa
AA seq
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MSSWAGPEDIYLSTSLASYLDRKILVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGE
QYCDIPLGLYVIRGENVVLIGDLDTEREELPPNMIRVSETEIKRAQKVEREASELRGTMR
KRMEFLDFD
NT seq
390 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttgggctggtcctgaagatatttacctttcaacttcactagctagctatctc
gatagaaagatacttgtgctccttagagatggtagaaagctaatgggaaccctccgttca
tttgatcaatttgccaatgcggttttagaaggtgcttgtgaaagggtaattgttggtgag
caatactgcgatatccctttaggcctctatgtaatccgtggagagaatgttgttctgatt
ggtgacctggacacggagagagaggagcttcctccaaatatgattcgcgtctcagagacc
gagattaaaagggcgcaaaaagtggagagggaagcgagtgagctgagaggaacaatgagg
aagagaatggagtttctcgacttcgattaa
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