Raphanus sativus (radish): 108859672
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Entry
108859672 CDS
T06014
Name
(RefSeq) probable CCR4-associated factor 1 homolog 5
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108859672
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108859672
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108859672
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108859672
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
NPB13-l_MII_rpt
DEDDh_C
Motif
Other DBs
NCBI-GeneID:
108859672
NCBI-ProteinID:
XP_018489081
UniProt:
A0A6J0NXU1
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Position
5:complement(19098130..19099291)
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AA seq
323 aa
AA seq
DB search
MTIHEIWSWNKTEEMNLVRESLRSCNYISVDTEFPGCLRETAMEASDDTRYQNLRFNVDR
TKPIQLGFSLFDSEGAISGTWEVNFSDFDETEDPCNEKSIAFLKRNGLDFQRIREEGVGI
KDFFAEFTQMIKDEAKKMNWVTFDGSYDLGYIVQSMTGRESLPDTSQGFQETVQKLLGLT
FDVKKLAGQCRGLNSRFGLQRLADELGITRVGEAHHAGSDSQLTARVFTNINLTLSRDLK
RKREHEDLQHQREIVRIRRECDRLAQHFFMQQQVMEQEILMRRCMPRRCYGPVHPPRPIM
YAHHPSPSGYFVVPVAPQLSNYL
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgacaatccacgagatctggtcttggaacaagacagaagagatgaatttggtgcgggaa
tctctaagaagctgtaattacatctctgtagacaccgagtttcccgggtgtctgagagag
accgccatggaagctagcgacgatactcgataccaaaacttgaggttcaatgtggaccga
accaaaccaattcaactgggtttctctttattcgacagcgaaggagcaatcagcggaacc
tgggaggtcaatttctcggacttcgacgagacagaggatccttgcaacgagaaatccatc
gccttcctcaagcgcaacggcctcgatttccagagaatcagagaggaaggagttggtatc
aaagatttcttcgcagagtttactcagatgattaaagacgaagccaagaagatgaattgg
gttactttcgatggatcgtacgatttaggttatatagttcagagcatgaccggacgcgaa
agtcttcccgacacatcacaggggtttcaagaaacggttcagaaacttttagggttaact
ttcgatgtcaagaaactcgcgggacagtgcagaggactcaacagtcgtttcgggttgcaa
agattagccgacgagcttggcatcacacgtgtaggagaagcgcatcatgctggctccgac
agccaactgacggctcgtgtgttcactaacataaacctcaccttgtctcgtgacctaaag
cgaaagcgggaacacgaggatctgcaacatcaacgagagattgtgaggataaggcgggaa
tgtgaccgattggcacaacatttttttatgcagcagcaagtgatggaacaagagattctt
atgcgaagatgtatgccaagaagatgttatggaccggtccatccacctagaccgattatg
tatgctcatcatccatctccaagtggctactttgtagtgccggtggcacctcaattgtca
aactatctgtga
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