Raphanus sativus (radish): 108859690
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Entry
108859690 CDS
T06014
Name
(RefSeq) aladin
KO
K14320
aladin
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108859690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108859690
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108859690
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_WDHD1_1st
ANAPC4_WD40
WD40
WD40_CDC20-Fz
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WD40_Prp19
DUF7397
WD40_MABP1-WDR62_1st
Sod_Fe_N
Motif
Other DBs
NCBI-GeneID:
108859690
NCBI-ProteinID:
XP_018489100
UniProt:
A0A6J0NXL4
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Position
5:25893508..25896413
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AA seq
443 aa
AA seq
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MASFPHPGSVTVCEINRDLITAQSLSDDRAQETYGKILGMVFSPVPFEAVPGSVDENEGQ
ESGGDKGVVERKGLVATLQGMVADSLKQILRPIDVSLLSEIDLQGVSWHQGKHIIAFVSG
ANQVSIRDYDDKDEKEPCLLTSDSQTSVKALEWRPNGGKSISVACRGGICIWTASYPGNM
ALVRSGGSSLRGSLSRGSGARWILVDFLRCQNDEQISALSWSPCGRYLASASYDSSSFTI
WDVSQGAGTPIRRGLGGISMLKWSPTGDYFFASRFDGTFCLWETNTWTSEPWSLSTGSGS
VTGALWDPEGRFILISFSKSLTLGSVHFSSKPPSLDAHLLPVELPELASLTGSEGIKKMA
WDASGERLAVSFKGGDENYKGLIAIYDTRRTPIVSASLVGFIRGPGENPEALSLSFHDKF
KQGPLLSVCWSTGFCCTYPLIFR
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgtttccccatcccggttccgtcaccgtctgcgagatcaacagagacttgatt
acggctcagagcttatccgatgatcgagctcaggagacttacggaaagatcctcgggatg
gtgtttagccctgttccgttcgaggctgtacctggctctgttgatgaaaacgaaggacaa
gagagtggtggtgataagggagttgttgagaggaaagggctggtggccacactgcaaggg
atggtcgctgactctcttaaacagattctacgacccatcgatgtaagtcttctgtcagag
attgatcttcagggagtgagttggcatcaagggaagcatattattgcctttgtatctggt
gccaatcaagtatcaattcgtgactatgatgacaaagatgagaaagaaccttgcttactt
acaagtgattctcagacaagtgttaaagcccttgagtggaggccaaatggtggaaaatcc
atctccgtagcctgtcggggagggatatgcatatggactgcttcctatccaggtaacatg
gctttggttagaagtggtggttcttcgttgaggggaagtctctctcgtggctctggagct
cgctggatcttggtggactttctccggtgtcaaaatgatgagcagatcagtgctctctca
tggagcccatgtggaagatatttggcatcagcttcatatgacagctcatctttcaccata
tgggatgtttctcaaggggcagggacacctattcgacggggactaggtggcatctcgatg
cttaagtggtcacccacaggggactacttctttgcatcaagatttgatgggacattttgc
ctttgggaaacaaacacatggacatcagagccatggtctttgtctactggatctggatct
gttacgggagcattatgggatccggaaggacgtttcatcttgatttcgttttcaaaatct
ttaacactgggctctgttcatttctcatccaagccaccatccttggatgcccatctgtta
ccagttgaattgccagagttagcttctttgactggcagcgagggaatcaagaagatggca
tgggatgcatctggggagcgattggctgtgtcattcaaaggaggtgatgaaaattacaaa
ggattgattgccatatacgacactcgaaggacccctattgtatcagcatcacttgttggt
ttcatcagaggacccggagaaaaccctgaagctctttccctttcattccatgacaagttc
aagcaaggtccactcctctccgtgtgttggagcactggattctgttgcacctatcctctc
atcttccgctga
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