Raphanus sativus (radish): 108859850
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Entry
108859850 CDS
T06014
Name
(RefSeq) geranylgeranyl pyrophosphate synthase 9, chloroplastic-like
KO
K13789
geranylgeranyl diphosphate synthase, type II [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00900
Terpenoid backbone biosynthesis
rsz01100
Metabolic pathways
rsz01110
Biosynthesis of secondary metabolites
Module
rsz_M00366
C10-C20 isoprenoid biosynthesis, plants
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
108859850
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
rsz01006
]
108859850
Enzymes [BR:
rsz01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
108859850
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
108859850
2.5.1.29 geranylgeranyl diphosphate synthase
108859850
Prenyltransferases [BR:
rsz01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
108859850
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Paralog
GFIT
Motif
Pfam:
polyprenyl_synt
Terpene_synth_C
Motif
Other DBs
NCBI-GeneID:
108859850
NCBI-ProteinID:
XP_018489260
UniProt:
A0A6J0NY35
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Position
5:complement(5713908..5716328)
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AA seq
354 aa
AA seq
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MAVVNLSSTSLFMQSRGRRHNSISSVKSLQRRTVLLITSRGGDMVSPEGKGKDHSSTFDF
KSYMIRKAESVNAALDASVPLLKPLTIQEAVRYSLLAGGKRVRPLLCLAACELVGGDEAT
AMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPSNHKVFGEDMAVLAGDALLALAFEHM
SIVSNGLVAPERTVRAVIELAKAIGTKGLVAGQVVDLSSEGINPEDAGLERLEFIHLHKT
AALLEAAAVLGVIMGGGTEEEMERFRKYARCIGLLFQVVDDILDVTKSTEELGKSAGKDV
IAGKLTYPRLIGLEKARELAEKLSREAEEHLLGFDPNKAAPLVALASYIACRHN
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atggctgttgttaatctcagctcaacctccctcttcatgcaatccagaggaagaagacac
aactccatatcctctgtcaagagtctccaaagacgcaccgttttgcttatcacgtcacga
ggtggcgacatggtttcaccggaggggaaaggcaaggatcacagctccacctttgacttc
aagtcgtatatgatccgtaaagccgaatctgtgaacgcggctctcgacgcttccgtaccg
cttctgaaacccctcacgattcaagaggcggtgcggtactcattgctagctggtggaaaa
cgcgtgaggcctctgctctgccttgctgcctgcgagcttgtgggtggcgacgaggctact
gccatgtcggcagcttgcgcggtggagatgatccacacgagctctcttattcatgacgac
cttccctgcatggacaatgctgatctccgcagaggcaagccatccaaccacaaggtattt
ggagaagacatggcagttctggcgggtgatgcactccttgctttggcgtttgagcacatg
tcgatcgtgtctaatggtttggtagctccggagagaacggtccgcgctgtaatagagctg
gcaaaggccatagggacaaaagggcttgtggctgggcaagtggttgacctatccagcgag
ggaataaatcctgaagacgctggattggagcgtctagagttcatccaccttcacaaaacg
gctgcattgttggaggcagctgctgttttaggagttataatgggaggtggaaccgaggaa
gagatggagaggtttagaaagtatgcgaggtgtattgggctgctgtttcaagtggttgat
gatattcttgacgtgacaaaatctaccgaggaattgggtaagagcgccgggaaagacgtt
atcgcgggaaaactaacttatccgaggttgattggtttggaaaaggctagggaacttgcg
gagaaactgagcagagaagcagaggaacatcttctagggtttgatccgaataaggcggcg
cctctggtggctctggctagctacattgcttgcagacacaactaa
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