Raphanus sativus (radish): 108859861
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Entry
108859861 CDS
T06014
Name
(RefSeq) LOW QUALITY PROTEIN: probable pectate lyase 7
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108859861
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108859861
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GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
API5
Motif
Other DBs
NCBI-GeneID:
108859861
NCBI-ProteinID:
XP_018489269
UniProt:
A0A6J0NX82
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Position
5:complement(39816697..39819043)
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AA seq
483 aa
AA seq
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METAMLFKLVCVIFIASLIPTLRANVAETDEYWVKMANEAQKRTLMAYHPDPYQIVDHFH
ERHYDNSTDVEETEEHASEEEDDIGMISSPTNSTRRSLRGRGRGRGRGRGRGRGRGRGRG
KWSKLKGPCTASNPIDKCWRCQPNWAMRRKNLVKCVRGFGYRTTGGKLGRIYVVSSNRDD
DTVNPRPGTLRHAVIQNEPLWIIFKHDMSIRLSQELMINSHKTIDARGTNVHIAYGAGIT
MQYVQNIIIHGLHVHHIVPGSGGMIRNSNDHFGFRGQADGDGISIFGATNIWLDHISMSK
CQDGLIDAIMGSTGITISNSHFTHHNDVMLLGAQNDNQADKKMQVTVAFNHFGKGLVQRM
PRIRWGFVHVVNNDYTHWELYAIGGSQSPTILSHGNRFIAPPHIQHYREVTKRDYAPESE
WKXWNWRSDKDIFMNNAYFRQSGNPRFMCSHSRQQMIKPKHGSAVSKLTKYAGALDCRVG
KPC
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atggagacggctatgcttttcaaattagtgtgtgtgatttttattgccagtttgattcct
accttaagagccaatgttgcggagaccgatgagtattgggtaaaaatggcaaatgaagct
caaaaacgtacccttatggcttatcatcccgatccctatcagattgtcgaccacttccac
gagcgtcactacgacaactctactgatgtggaggaaacggaggaacacgcatccgaggaa
gaggacgacattgggatgatttctagtcctacgaacagcacaagacggagcttaagaggt
agaggtagaggtagaggtagaggcagaggcagaggcagaggcagaggcagaggcagaggg
aaatggagcaagctaaagggaccttgcactgcaagtaaccctatcgataaatgttggcgt
tgccagcccaattgggccatgcgccgcaagaacctcgtcaaatgtgttcgtggattcggt
tacaggaccacgggaggcaaactcggtcgaatctacgtggtcagtagcaacagagacgat
gatacggtgaaccctagacctggaacactgcgtcatgccgtgattcagaacgaaccgcta
tggatcattttcaagcacgatatgagcattaggttgagccaagagctaatgattaatagt
cacaagacgattgatgctcgtggcactaacgtgcacatcgcatatggtgctgggatcacg
atgcagtacgtgcaaaatatcatcatccatgggcttcacgtgcatcacatcgtccccggc
agtggtggcatgataagaaactctaatgaccactttgggtttagaggacaggccgatgga
gatggtatctctatctttggagcaacaaacatttggcttgaccacatttctatgtctaaa
tgccaagatggtctcatcgacgctataatgggctccaccgggatcactatctctaactct
catttcacccaccacaacgatgtgatgttgcttggtgcacaaaatgacaaccaagcggac
aagaagatgcaagtcactgtggctttcaaccactttggtaaaggacttgtgcagaggatg
ccgaggattcggtggggtttcgtccatgttgtcaacaatgactacactcactgggagctt
tacgctatcggcggtagccaaagtcctaccattctcagccacggaaaccgtttcatcgct
cctcctcacatacaacattacagagaggtgacaaagagggattatgctccagaatcggag
tggaaanattggaattggagatccgacaaagacattttcatgaacaatgcatatttcaga
caatctggaaatccaaggttcatgtgttcacactctagacaacagatgataaagcccaaa
cacggttcggccgtttcaaagcttaccaaatacgccggagcattggattgccgggtcgga
aaaccatgctaa
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