Raphanus sativus (radish): 108859926
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Entry
108859926 CDS
T06014
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Module
rsz_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108859926
Enzymes [BR:
rsz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
108859926
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
End_N_terminal
Motif
Other DBs
NCBI-GeneID:
108859926
NCBI-ProteinID:
XP_018489326
UniProt:
A0A6J0NYG2
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Position
5:36609298..36611777
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AA seq
453 aa
AA seq
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MQKKTWILNFSVFFLHIFTSSKALDVTQYGAIGDGVTDDSQAFLKAWEVVCSGTGDGQLI
VPAGMTFVLQPLKFQGSCKSTPIAVQILGNMVASSRGNWEGDKDQWILFSDIEGLVVEGN
GEINGQGSSWWEHKGSSRPTALKFKSCNNLRLSGLTHVDSAKAHIHINNCNGVSISNLRI
NAPESSPNTDGIDVAASSNVIIQDCVIATGDDCIAINSGTSNIRVSGIDCGPGHGISIGS
LGKDGETASVEDVCVQNCNFRGTTNGARIKTWPGGSGYARRITFNGITLDNVENPIIIDQ
HYNNGGSEKNTDDKSSAVEVSKVVYSNFVGTSKSEYGVDFRCSEAVPCTEIIMKDVRIET
ASSGSGQVAQGQCLNVRGVSTLAVPGLECLALSTDMLSLAELPEQTCMLPQPSVQPSTRP
MQDPFWVYGSGGKRLRVFNVVLTSFIFLVLYMF
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagaagacgtggatcttaaatttctcagtattctttctccatatctttacatct
tcgaaagcattggatgttactcaatacggagcaattggagatggagttacagacgattct
caggcgttcttgaaagcctgggaagttgtctgtagcgggacaggggatgggcagcttatc
gttccggcagggatgacatttgtgttacagcccttgaagtttcaaggttcttgcaaatcg
acccctattgctgttcagattttgggcaatatggttgcatcaagtagagggaactgggaa
ggagacaaagatcaatggattctcttctcagacatagaagggcttgtggttgaaggcaac
ggtgaaatcaacggccagggttcgagctggtgggaacacaaaggcagctctagaccaacc
gcattgaagttcaagagctgcaacaaccttagactaagtggactaacgcacgtagatagt
gcaaaggctcacattcacataaacaattgtaacggtgtgagcatctcaaatctccggata
aatgcaccggaatcaagtcctaacactgatggaatcgacgtcgctgcttcatccaatgtt
atcatccaggattgcgtaatcgccaccggtgacgattgcattgcgataaactcggggacg
tctaacatcagagtttccggtatagattgcggaccaggccatggaataagcataggaagc
ttggggaaagatggagagacagcttcagtggaggatgtatgtgtccagaactgtaacttt
cgaggaactacgaatggagctcggatcaaaacctggccgggaggatcaggttacgcaaga
aggattactttcaatggaattactctagataacgtggaaaacccgatcataatcgatcag
cattacaacaatggaggttctgagaaaaacacagatgataagtcatcggcggtggaagta
agcaaagtcgtgtatagtaatttcgtgggtacgtccaagtcagagtacggagttgacttt
aggtgtagcgaggctgtaccatgcaccgagattattatgaaagatgtgagaatagaaaca
gcatcatcaggatcaggacaagtcgcacaaggacagtgcttaaacgtgagaggtgtgtcc
actcttgccgtaccaggtttagaatgtttagcactttccacagatatgttatcattggcg
gagttgccggaacaaacttgtatgttgccgcaaccatcagtgcaaccaagtacacgaccg
atgcaggatccattttgggtttatggaagcggagggaaacgactcagagtttttaatgta
gtattaacttcatttatctttctggttttatatatgttttag
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