Raphanus sativus (radish): 108860245
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Entry
108860245 CDS
T06014
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108860245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsz03041
]
108860245
03009 Ribosome biogenesis [BR:
rsz03009
]
108860245
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108860245
Spliceosome [BR:
rsz03041
]
Complex A
U2 snRNP components
U2 related factors
108860245
Complex B
108860245
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
108860245
Ribosome biogenesis [BR:
rsz03009
]
Eukaryotic type
90S particles
Helicases
108860245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
HA2_N
DEAD
AAA_19
AAA_22
Motif
Other DBs
NCBI-GeneID:
108860245
NCBI-ProteinID:
XP_056867410
UniProt:
A0A9W3DUA8
LinkDB
All DBs
Position
5:39190976..39194681
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AA seq
416 aa
AA seq
DB search
MMMMKKKSDAEERGNLPVWEQKEEFIRTLKENQMVMVTGETGSGIQQFVLEAVMDEKPSA
SGKWLVGWTQPHEVAAMSAARRVAEEMDVKIGEEVGYTVLSEDCSSFRTVLKYMTKRMLL
REARADPLLARYKVIVVDEVHDRSLAATDLLGILKRTLISRPDLKLVVMSATLQAFDREY
FRGAPLIKVTSGRLLHPVEILYTREPVMDYLESAISKVIQVHTCEPPGDVLVFLTRKEEI
EQACSRIVLTLGDQVRVVPLYSSLPPALKRKILEPTPDSVRKIVVSTNIAETSMSIDGIA
YVVDPGVSPISRASADQRAGRAGIKCFRLYTEKTFNHFPRETPETFRSDLVNTVLTLKKM
GVKDLTSFEFRHPPPSPEMLLMALTDLFHLGAVDEEGNLTKIGQMIQSFEVTLYYH
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgatgaagaagaagtcagatgctgaagaacgtgggaatctaccggtatgggaa
caaaaagaagagtttatccgaactttgaaggagaatcagatggtgatggtgacgggtgag
accggtagtggtatccaacagtttgttttagaagcagtgatggatgaaaaacctagcgcc
tctggtaagtggttggttgggtggacgcagcctcatgaagttgcagccatgtccgcggca
cgtcgtgtggctgaagagatggacgtaaagattggggaagaagtgggttacacagtcctt
tccgaggattgcagtagcttccgaacggtgctaaagtacatgactaaaagaatgcttctg
agggaagccagagcggatccgctattagcgagatacaaagtgattgtcgtggacgaagtg
catgatagaagtttagccgccacagatttacttggcattcttaaacgcaccttgataagc
cgacctgatcttaagcttgttgtgatgagtgcaaccctacaggcttttgacagagagtat
tttcgtggtgcgcctctcatcaaagtcacttctggtaggctcctccatccagtggagatc
ttgtacactcgagaacctgtgatggactatctcgagtctgctataagcaaagttatccag
gttcacacgtgtgagccacctggtgatgttcttgttttcttgaccaggaaagaagagatt
gaacaagcttgcagccgaattgtccttactcttggagatcaagtcagagttgtgccctta
tattcctctcttccaccagccctgaaacgcaagatcttagagcctacaccagattcagtg
agaaagatcgtggtctccaccaacattgctgagacttctatgtccattgacgggattgct
tacgtggttgatcctggggtgtccccaatatcccgagcaagtgctgaccagagagcagga
cgtgcaggtataaaatgtttcaggctctacactgagaagacattcaatcacttccctcgg
gagactcctgagacatttagatcagaccttgttaacactgttttgactttgaaaaagatg
ggtgtgaaggacttgacatcatttgaatttagacatcctcctccttcccctgaaatgctc
cttatggccttgaccgatttgtttcatctgggagctgtggatgaggaaggtaacttgaca
aagataggccagatgatacagagtttcgaagtgactctgtattatcattga
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