Raphanus sativus (radish): 108860742
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Entry
108860742 CDS
T06014
Name
(RefSeq) nuclear pore complex protein NUP107
KO
K14301
nuclear pore complex protein Nup107
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108860742
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108860742
03036 Chromosome and associated proteins [BR:
rsz03036
]
108860742
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108860742
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
108860742
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup84_Nup100
Motif
Other DBs
NCBI-GeneID:
108860742
NCBI-ProteinID:
XP_018490093
UniProt:
A0A6J0P2C8
LinkDB
All DBs
Position
5:5375562..5383003
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AA seq
1075 aa
AA seq
DB search
MDMDTSPSYFDPEVLTVRDQFRRYGKRHSTSPHEEFSSPNVSENRLLYDGHSIHSPTNTA
LLLENIKEEVDNFHTDFYQGNPLSASKREKSAGILDDDDDDDDEALFRRVESQSLKACKI
ENDELAESGDTTFALFASLFDSALQGLMSIPDLILRLEESCRDVSQSIRYGSDVRHRVVE
DKLMRQKAQLLLGEAASWSLLWNLYGKATEEVPEELIMSPSTSHLEACQFVVNDHTAQLC
LRIVLWLEELASKSLDLERKVRGSHVGTYLPNAGVWHHTQRYLKKTGSGADTVRHLDFDA
PTREHARLLPDDNKQDESLLEDVWILIRAGRIEEACDLCRSAGQPWRAATLCPFSGMDMF
PSVEALVKNGKNRTLQAIELESGFGNQLRLWKWASYCASEKIAEQDGGKHEVAVFANQCS
NLNRILPVCTDWESACWAMAKSWLDVQVDLELAQSKPGLAERFRSRLDGSPETMQNGSLA
SFGPEEWPLHVLNQQPRDLSALLQKLHSGEMVHEAVVRGCKEQHRQIQMSLMKGDISHLL
DIIWSWIAPLEDDQSNFRPHGDPHMIKFGAHVVLVLRYMLADEIKDREKLTNVGDLILHM
YSMFLFSKQHEELVGIYASQLAGHRCIELFVHMMELRMHSSVHVKYKIFLSAMEYLPFSH
VDDSQGNFEEIVDRVLSRSREIKLAKYDPSVDVAEQHRQQSLQKAIAIQWLCFTPPSTIK
DVKDVASKLLLRSLMHSNILFREFALIAMWRVPATPVGAHTLLSFLAEPLKQLSENQDTL
VDYVSENLQEFQDWNEYYSCDAKYRNWLKFQVENAEVTDLSEEENQKAIVAAKETLDSSL
LLLLRKDNPWLTFLEDNVFESEEYMFLELHATAMLCLPSGECLQPDATICAALMSALYAS
VTEEVVLDRQLMVNVSISSRDSYCIEVVLRCLATEGDGLGPHNTNDGGILSAVAAAGFKG
ELSRFQAGVTMDISRLDAWYSSKEGSLETPATYIVRGLCRRCCLPELVLRSMQVSVFLME
SGNPPEDHDELIELVASDETGFLSLFSQLQLQEFMLFEREYRLSQLELQEELSSS
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atggatatggacacttctcctagctacttcgaccccgaggtcctcactgttagggatcaa
ttccgtcgttatgggaagagacactctacatcgccacatgaggaattctcgagtccgaat
gtcagtgagaacagactactgtatgatgggcattccatccacagtccaaccaacactgcc
ttgcttcttgaaaacattaaagaagaggttgacaactttcacaccgatttttaccaagga
aatccgctctctgcttctaaaagggaaaaaagtgctggaattctggatgatgatgatgat
gatgatgatgaggctttgtttcgccgagtagaaagtcaatcgctgaaggcttgcaaaatt
gagaatgatgagttggcggagagtggagatacaacctttgctctctttgcttcccttttt
gattctgctcttcaaggactcatgtccattcctgatctaatattaagacttgaggagtca
tgcagggatgtttcacaatcaattaggtatggatcagatgtaagacatcgggttgtagag
gataaacttatgagacagaaggctcagcttttgcttggtgaggctgcctcctggtcactt
ctatggaacctatatggaaaagctactgaagaagttccagaggaattgattatgtcacca
tcaacatctcatttggaggcttgtcagtttgttgtaaacgaccatacagctcagctatgc
cttcggattgtcctatggctggaagaactagcttccaaatcacttgatttggaaaggaag
gtgcggggatctcatgtgggtacttatcttcctaacgctggagtgtggcatcacacacaa
aggtacctcaagaaaactggttccggcgctgacactgtacgccatttggactttgatgct
ccaactcgtgaacatgctcgtcttcttcctgatgataataaacaagatgaatctcttctt
gaggatgtttggattttgataagggctgggagaatagaggaggcatgtgatctctgcagg
tccgctgggcagccatggagagctgcaactctatgccctttttctggaatggacatgttt
ccttctgttgaggcattggtaaagaacgggaaaaataggactctccaagctatcgagctg
gaaagtggatttggcaatcagctgcgtctttggaaatgggcttcgtactgcgcatcagag
aaaatcgcagagcaggatggcggcaaacatgaagttgctgtttttgcaaaccagtgtagt
aacctgaaccgcatcttaccagtttgtactgattgggagtcagcttgctgggcgatggca
aaatcatggcttgatgttcaagttgatctagaactcgcccaatcaaaaccaggcttggca
gaaaggtttagaagccgtcttgatggaagccctgaaactatgcaaaatggttctctagct
tcatttgggccagaagagtggccgctccatgttctaaaccaacaaccccgtgatctttct
gctcttcttcagaaactccattcaggggaaatggtacacgaagctgttgtcaggggatgc
aaagagcagcaccggcaaatacagatgagccttatgaaaggggacatctcacatcttctt
gatataatatggtcatggatcgcgcccttagaagatgatcagagcaattttagaccccat
ggcgatcctcatatgataaagttcggtgcccacgtggtgcttgttcttagatatatgctt
gctgatgaaatcaaggacagggagaagctcactaatgttggcgatcttattcttcatatg
tactcgatgttcttattttcaaaacaacatgaagaactagtaggaatatatgcatctcag
cttgctggtcaccgctgcattgaactttttgtacacatgatggagctaaggatgcatagc
agtgtacatgtgaagtacaaaatcttcctctccgctatggaatacttgccattctctcat
gtggatgattcacaaggaaattttgaggaaatagttgacagggttttgtcaagatcccgg
gaaattaaacttgcaaaatatgatccctccgttgatgttgcagagcagcatcgtcaacag
agtcttcaaaaagccatagccatccagtggctctgttttacacctccatctacaataaag
gatgtcaaggatgtcgcttccaaattactcctgcgatctttgatgcacagcaacatactt
ttccgagagtttgctttaattgccatgtggagggtacctgcaactcctgtgggtgcacac
acacttcttagtttccttgctgaacctctgaagcaactctcagaaaatcaagataccctc
gtggattatgtttccgagaatttgcaggagttccaagactggaatgaatattattcctgt
gacgcaaaatatcgcaactggctcaaattccaagtagagaatgctgaagtaactgatcta
tcagaagaggaaaatcagaaagctatagtagcagccaaagagactttggattcttctctg
ttactgctcctcagaaaagacaatccctggttgacatttctcgaagacaatgtattcgaa
tcagaagaatatatgttccttgagttgcatgcaactgcaatgctctgtttgccttctggt
gaatgtttgcagccagatgctactatttgtgcggcgttgatgagtgcgctttacgcctct
gtcactgaggaagttgttttagaccgtcagttaatggtaaatgtatccatttcatcaagg
gacagttactgtatcgaggttgtgctccggtgtttagcaactgaaggtgatggactgggg
ccacacaataccaatgacggcggtattttaagtgcagttgcagctgctggatttaaaggt
gagctttcccggttccaggcaggtgttacaatggatatttcccgcctagacgcttggtat
tcaagcaaagaaggctcgcttgaaacacctgcaacttatattgtccgcggtctctgtagg
agatgctgtcttccagagctcgttcttcgatctatgcaggtgtctgtttttctaatggag
tcgggaaatccacccgaagatcacgatgaactgattgagctcgttgcttctgatgaaact
ggttttctctctttattcagtcagctacagttacaggagtttatgctgttcgagagagag
tatcgtctgtcccagttggagctccaggaggaactttcatcatcttga
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