Raphanus sativus (radish): 108860820
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Entry
108860820 CDS
T06014
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108860820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsz03041
]
108860820
03009 Ribosome biogenesis [BR:
rsz03009
]
108860820
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108860820
Spliceosome [BR:
rsz03041
]
Complex A
U2 snRNP components
U2 related factors
108860820
Complex B
108860820
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
108860820
Ribosome biogenesis [BR:
rsz03009
]
Eukaryotic type
90S particles
Helicases
108860820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
AAA_22
AAA_19
HA2_N
T2SSE
ATPase
nSTAND3
AAA_16
SRP54
AAA_7
AAA_24
AAA_30
AAA_29
PhoH
DUF5629
Septin
MOEP19
DHHW
NTPase_1
TrwB_AAD_bind
Myosin_head
ABC_tran
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
108860820
NCBI-ProteinID:
XP_018490170
UniProt:
A0A6J0P0I9
LinkDB
All DBs
Position
5:38640759..38642252
Genome browser
AA seq
444 aa
AA seq
DB search
MMMKKKSAARYYEERRNLPVWVQKEEFLRTFMENQMVMVTGETGSGKTTQIPQFVLETVM
DENYPSSDDQWLVGCTQPHRVAAISAARRVAEEMDVKIGEEVGYTVRFEDCSSSRTVLKY
LTNDVLLREARADPLLARYKVIILDEVHDRSLATDLLVGILKRTLTSRPDFKLVVMSATL
EEYFSGAPLIKEYFSGAPLIKVPSSLHPVEIWYTREPVMDYLESAISKVIQIHMCEPTGD
ILVFLTGEEEIEQACSRIIRSLGDQVTVVPLYSSLPSAVQHKIFDPTPKSLRKIIVSTNV
AETSLSMDGIVYVVDSGFSKQKDYDFHTAVEFWLVSPISQASAYQRAGRAGRTRPGKCFR
LYTEQTFNDFPVRETPEIVRSNPVNTVLTLKQLGVNDLKSFEYIDPPSPKMLLRALEDLF
HLGAVDDQGNLTNIGLMMSLEEPL
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgaagaagaagtcagctgctaggtattacgaagaacggaggaatctaccagta
tgggtgcaaaaagaagagtttctccgaactttcatggagaatcagatggtgatggtgacc
ggtgagaccggtagtggtaaaacaacgcagatcccacagtttgttttagaaacagtgatg
gatgaaaattaccctagctctgatgatcagtggttggttgggtgcacgcagcctcatcga
gttgcagccatatctgccgcacgtcgtgtcgccgaagagatggatgtaaagataggggaa
gaagtcggttacacagtccgttttgaggattgcagtagctcccgaacagtgctcaaatat
ctgactaatgatgtgcttctgagggaagccagggcggatccgctcttagctagatacaaa
gtgattatcctggacgaagtgcatgatagaagtttagccacggatttacttgttggtatt
cttaaacgcaccttgactagccgacctgattttaaacttgttgtgatgagtgcaacccta
gaggagtattttagtggtgcgcctctcatcaaggagtactttagtggtgcgcctctcatc
aaagtcccttctagcctccatccagtggagatctggtacactcgagaacccgtgatggac
tatctcgagtctgctataagcaaagttatccagattcacatgtgtgaaccaacaggtgac
attcttgttttcttgaccggggaagaagagattgaacaagcttgcagtagaattatccgt
agtcttggagatcaagtcacagttgtgcccttgtattcctctcttccatcagccgtgcaa
cacaagatcttcgatcctacaccaaagtcattgagaaagatcatcgtctccaccaacgtt
gctgagacttctttgtccatggacgggattgtttatgtggttgattctggtttctccaag
caaaaagactacgactttcacactgctgtcgagttctggttggtgtccccaatatcccaa
gcaagtgcttaccagagagcaggacgtgccggtagaacacggcctggaaaatgtttcagg
ctctacactgagcagactttcaatgacttcccggttcgggagactcctgagatagttaga
tcaaaccctgttaacacagttttgactttgaaacagctgggtgtgaacgacttgaaatcg
tttgaatatatagatcctccttcccctaaaatgctcttacgggccttggaggatttgttt
catctgggagctgtagatgaccaaggtaacttgacaaatataggcctgatgatgagtcta
gaagagccactttga
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