Raphanus sativus (radish): 108860828
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Entry
108860828 CDS
T06014
Name
(RefSeq) probable E3 ubiquitin ligase SUD1
KO
K10661
E3 ubiquitin-protein ligase MARCH6 [EC:
2.3.2.27
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
108860828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rsz04121
]
108860828
Enzymes [BR:
rsz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108860828
Ubiquitin system [BR:
rsz04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
March proteins
108860828
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MARCHF6_C
RINGv
Motif
Other DBs
NCBI-GeneID:
108860828
NCBI-ProteinID:
XP_056866619
UniProt:
A0A9W3DSC6
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All DBs
Position
5:38766081..38769783
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AA seq
880 aa
AA seq
DB search
MDDSPEVDGYDQKSFSSGEEEEEDSCRICRSPEKPGNPLMFPCSCRGSIKYVHQDCLLIW
LDRRGYKKCEVCGRSYSFVPVYSENAPERLPCNEFLIGVSSRASRYIKLIGPWIAVILLN
TYFVSFHPWAQQFAADSRSRDSWMSRKLPYLLPGLLYNSLVSSFMNMATSVMIDTGDVDV
RRFGRVVQVLWKYLTILSVWHHHKMVGVLGQPQRPIVLPQNAQIHEFGVIRQLLFFLDDD
AFALLAISVYVSTLFVLLPVWIGWVVLATSGGSFLSVNSPVILGYMTLLSACFAYFTLPL
IPFPAIVRWVSLGVHFTALKLPSLLWAFSVKTCKTLQSQTSFQAIVQWVSLGFHFVAVIL
PPPLWILIKDSFVLCIKIGVLPWIIGCWLEICTSPLFGTGFFQIFETLSDLPSMTTLRWL
SGILCLLVAESFMKRIQEIIHKRAFWYLLDVTDPDYKITKMNFGHTFFALASHGVLLVIM
FHLPIRAITLISPSFFPLQLWVMDEKVSFGARFVYVRLLMASPKWLLGLTKPAVELIVQN
WIVTVSSWLELSDFLLVGPRGPMMQPRSTLLFYSLAEGSMVTLHGSQNAEEDVKDQRDNR
FLLRVALMLVLAALSMFIVSTAFMGLPIFLGRGFLESMSFILRYYGLKRDDLCAFWIGYN
TWTGIYTCTCFVYDEIHKGRIDVLLRDVSEWIRNVLLFSIWVTVIPGLLGVLIDLMVIIP
TRVPLDESPVYFLIQDWLIGVVVLHIWALLTMLTPINWFATEAWRRKFERIRTVGIDRLP
SMWLLREVIGSLIITLITTLSIPYLLVKSVFPLLGFQESVNSAVERLIWPALLALIAVWF
MVKLTREVVINVHQLVFNERYMVGERLDNLAEEEDTELRI
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atggacgattcgccggaagtcgatggctacgaccagaagagcttttcgtcaggagaagaa
gaagaagaagactcgtgccggatttgtcgatcgccggagaaaccagggaacccgttgatg
tttccgtgctcgtgtcgaggctcaatcaagtacgtccaccaagattgtcttctcatctgg
ctcgatcgtcgcggatacaagaaatgcgaggtatgtgggcgtagctactcttttgttcca
gtttactccgagaatgctcccgagaggcttccatgtaacgagtttctgattggtgtctca
tcgagagcatcacgttacattaagttgattggtccttggattgccgtgattctcttgaac
acctacttcgtttctttccatccttgggctcaacaattcgctgctgactcccggagtaga
gattcttggatgtctcggaagctcccttacttgctccctggcctgttatacaacagtctt
gtctcgtctttcatgaatatggccacttcggtgatgatagatacaggagatgtcgatgtc
aggagattcggccgagtcgtccaggttttgtggaagtatctgacgatcctttctgtttgg
catcatcataagatggtaggcgtcttgggccaacctcagagaccaatcgtgcttcctcaa
aacgcgcagattcatgagtttggggttatccgtcagctgctcttctttctggatgatgat
gcctttgctcttcttgccatcagcgtatacgtgtctaccctctttgttctccttcccgtt
tggattggatgggttgtattagcaacttctggaggcagctttctgtctgtaaactcgcct
gttattctcggatacatgacgctgctgtcagcttgctttgcttacttcactctccctcta
atcccatttccagccatagtccggtgggtttctctgggagttcacttcacagcactgaaa
ctgccatctcttttgtgggctttctctgtaaaaacctgcaaaacccttcaaagtcaaacc
tcatttcaagccatagtccagtgggtttctttgggatttcacttcgttgcagtgatcttg
ccacctcccttgtggattctcattaaggattctttcgtcttgtgtatcaaaattggtgtt
ttgccttggataattggctgttggctcgaaatctgcacctcccctctgtttggaaccgga
tttttccagatatttgagactctttcagacttgccctccatgacgaccctacgttggctt
tctggtatcctttgcttgttggttgctgagtctttcatgaaacgtatccaagagatcatt
cataaaagagccttttggtatctcctagatgtcacagatccagactacaagatcaccaaa
atgaactttggtcacactttctttgcgcttgcttctcatggggtattgttggtgattatg
tttcacttaccaattagggcaattacacttatcagcccatcatttttccctcttcagtta
tgggtcatggacgaaaaggtttcttttggtgcacgctttgtttatgtcagactactaatg
gcatcccccaaatggttactaggacttaccaaaccagctgtggaactcatagttcagaac
tggattgtcactgttagttcttggcttgagctgagtgatttcttgctggttgggcccaga
ggaccaatgatgcaaccaagaagtacgcttttattttattccctagctgaaggctctatg
gtcactttgcacggatctcagaatgctgaagaagatgttaaagaccaaagagataacagg
tttctgctgagggttgcattgatgttggtgctagctgctttgagtatgttcatcgttagt
acagccttcatgggtttacctatttttctggggagaggtttccttgagtctatgtctttc
attctaagatattatggactcaaacgtgacgatctttgtgctttttggattggatataat
acctggacagggatctatacctgcacttgctttgtatatgatgaaattcacaagggaaga
atcgatgtgcttctcagagatgtctctgaatggatacgaaatgtattgcttttctccatc
tgggtcactgtcataccgggactgctcggtgtacttatcgaccttatggtcattatccca
acacgagtaccgttagacgagtcaccggtctatttcttgatccaagattggctgatagga
gtagtggtgcttcacatatgggccttgctgacaatgctcacgcctatcaactggtttgca
actgaggcatggagaagaaagtttgaaagaatcagaactgttggaattgatagacttcct
tcaatgtggctgcttcgagaagtgatcggttcacttataatcacacttataaccacactc
tccatcccttacctgctcgtgaagtcagtgtttccattgcttgggtttcaagaaagcgtc
aactcagcagttgagcggcttatatggccggcgttattagccttgatagcggtttggttc
atggtcaagctaacacgtgaagtcgttatcaacgttcaccaattggtcttcaatgaacgg
tacatggtgggtgaaagactggacaatttggctgaagaagaagatacagagctgcgtata
taa
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