Raphanus sativus (radish): 108861288
Help
Entry
108861288 CDS
T06014
Name
(RefSeq) uncharacterized protein LOC108861288 isoform X1
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rsz03016
]
108861288
Enzymes [BR:
rsz01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
108861288
Transfer RNA biogenesis [BR:
rsz03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
108861288
Prokaryotic type
108861288
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
PUS7L_N
DUF674
R3H_PUS7L
Motif
Other DBs
NCBI-GeneID:
108861288
NCBI-ProteinID:
XP_018490627
UniProt:
A0A6J0P0S1
LinkDB
All DBs
Position
5:39295712..39300088
Genome browser
AA seq
701 aa
AA seq
DB search
MKAMQLNKTVSSCLLSLLKLKPYLSFHRTSTMAAAAKTSEGTKTVDESDVGISCFISQLP
GFRGILKQRYADFIVNEVDMDGSVVRLTSLDVSPEMDVKEEDKLKCSDNVPQSYASAIES
FRSLCSASDAERMETLVNQVTSGTEDEISPVVLDPSSDKSKRTAIHNFVKEKFKFLVTDT
VDGPDPTSKCIRVRVNSGNSGGKRSRKRKERGDKPFDSRGSEHWPADVGKFLKFHLYKEN
KDTQEALGLIGKMLGVQPKSFGFSGTKDKRSVSTQRVTVFKQQASKLAALNKRLFGIKVG
DFCLVKEGLLLGQLMGNRFTITLRGVVADSEENIKKSAESLGKDGFINYFGLQRFGSGSV
PTHHVGAALLKGEWKEAVDMILDPRESERNVVNEAREYYKETGDIDGTLRQLPRYLVAER
AILQCLKKCPGNYLQALKGIPRTLRMMYVHSYQSYLWNNAASLRVQKYGTNQVVLGDLVS
TKVDDAKKTVDSLTSEHKENSEEALDCDQLDDTAVVDLPGERSDLVKVIGIEDIEAGTYS
TSDIVLPLPGSRVIYPSNDIAEIFHDLAKKDGISLTESIHGVKEFSITSMTGGYRRVFQK
PIDFEWELLTYTDSNKPLAETDLDRITMEKPVDKVESAEETESIKSDSNQPESCETDLKD
AEQTQLALKMALTLPSSCYATMAIRELLKTSTSVAYHKTLN
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcaatgcaactaaacaaaactgtttcgtcctgtttgttgtctctgctaaaacta
aaaccctacttgagctttcaccggacttcgacaatggcggctgcagctaaaacctctgag
ggtacgaagaccgttgatgaatccgacgtgggcatctcctgtttcatctcccagctccct
ggcttccgcgggattctcaaacaaagatacgcagactttattgttaatgaagtggatatg
gatggaagtgttgttcgtttgacatccttggacgtctctcctgagatggatgtgaaggag
gaagacaaattgaaatgttcagataatgtaccccaaagctatgcttctgctattgagtcc
ttcagatctctttgcagtgcctctgatgcagagcgtatggaaactttggttaatcaagtc
acttcaggaactgaagatgagatctcaccggttgttcttgatccaagttctgacaagtcc
aagagaacggctatccacaactttgttaaagaaaaattcaagtttctagtgaccgacact
gtagatggtccagatcctacttcgaaatgcatccgtgtgcgagtgaattcaggaaacagt
ggaggtaaaagatcgagaaagcgcaaggaaagaggtgataagccgtttgatagcagaggt
tcagagcattggccagcggatgttggcaagtttctcaagttccatctttacaaggagaac
aaagatacacaagaggccttgggtttgattggaaagatgcttggcgttcagccaaagtcg
ttcggattctctggaacaaaagacaagcgatcagtttcaactcaacgtgtaactgtgttc
aaacagcaagctagcaaattggctgcgcttaacaagagattgtttgggatcaaagttggt
gacttctgccttgtcaaagagggccttctccttgggcagctaatggggaacagatttacc
atcacattaagaggagtggttgcagattctgaagaaaatatcaaaaagtctgcagaatca
ttagggaaagatggcttcatcaactactttggcttgcagcgtttcggaagtggttcagta
ccaactcaccatgttggagccgcactgctgaaaggagagtggaaagaagcggtggacatg
attcttgatccaagagaaagtgaaaggaatgtagtaaatgaagcccgggaatactataaa
gaaactggcgacattgacgggactctaaggcaattaccgcggtacctcgttgctgaaaga
gccattctgcagtgtctgaagaaatgtcctgggaactacctgcaggctctgaaaggcata
cccagaactttgagaatgatgtatgtacatagttatcagagctacttatggaacaatgca
gcaagtttgcgcgtgcaaaaatacggcaccaaccaagttgtgttgggggatttggtaagt
acaaaggtagatgatgcgaagaaaaccgtggacagtttgacctctgaacacaaggaaaac
agcgaagaggcattagattgtgaccaattagatgatactgctgttgttgatcttccagga
gaaaggagtgatcttgttaaggttataggtatagaagacatagaagctggaacttactct
accagtgacattgtcctccctcttcctggttccagagttatttacccgtccaatgacatt
gctgaaatttttcatgatttagcaaagaaggacggtatcagcctaacagagagcattcat
ggtgtaaaggaattctcaataactagcatgacgggtggttatagacgtgttttccagaag
ccaattgactttgaatgggagttactgacttacactgacagcaataaaccattggcagag
acggacctggacaggataaccatggaaaagccggtggataaagttgaatcagctgaagaa
actgaatcgataaaatccgatagcaaccaaccagaatcatgtgaaaccgatttgaaagat
gctgagcagacacagttggctctcaaaatggcacttacacttccatcttcttgctatgca
acaatggcaatcagagagctgttaaagacgtcaacttctgttgcatatcataagacacta
aactag
DBGET
integrated database retrieval system
