Raphanus sativus (radish): 108861347
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Entry
108861347 CDS
T06014
Name
(RefSeq) cell division control protein 48 homolog A
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
108861347
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108861347
03009 Ribosome biogenesis [BR:
rsz03009
]
108861347
04131 Membrane trafficking [BR:
rsz04131
]
108861347
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rsz04147
]
108861347
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
108861347
Ribosome biogenesis [BR:
rsz03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
108861347
Membrane trafficking [BR:
rsz04131
]
SNARE
SNARE associated proteins
Others
108861347
Autophagy
Aggrephagy
Other aggrephagy associated proteins
108861347
Exosome [BR:
rsz04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108861347
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_2
AAA_5
AAA_22
AAA_14
AAA_33
TIP49
NPHP3_N
RNA_helicase
nSTAND3
AAA_17
Mg_chelatase
AAA_28
ATPase_2
Parvo_NS1
AAA_18
IstB_IS21
Vps4_C
ABC_tran
Viral_helicase1
AAA_7
AAA_lid_PRS2_C
NB-ARC
TsaE
DUF815
NACHT
AAA_24
Zeta_toxin
Zot
Motif
Other DBs
NCBI-GeneID:
108861347
NCBI-ProteinID:
XP_018490689
UniProt:
A0A6J0P1G0
LinkDB
All DBs
Position
5:38390905..38394198
Genome browser
AA seq
809 aa
AA seq
DB search
MSNPAESSDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDT
ILIKGKKRKDTICIALADESCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHI
LPVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVV
APDTEIFCEGEPVKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP
PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNA
PSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPAL
RRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLAALCTE
AALQCIREKMDVIDLEDDSIDAEILNSMAVTNEHFHTALGNSNPSALRETVVEVPNVSWD
DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA
NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGGGGGGDAGGA
ADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNI
FKACLRKSPVAKDVDINALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKEKRRSLN
PEAMEEDGVDEVSEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFET
NTGSGATTGVADPFATSAAAAADDDDLYN
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacccagctgaatcttccgactcgaaatcgaagaaagatttcagtactgctatt
ctcgagaggaagaagtctcccaacagacttgtcgtcgatgaggccatcaacgatgataac
tccgtcgtctctctccaccctgccaccatggagaagctccagctcttccgtggcgatacc
attctcatcaagggtaagaaaaggaaagacactatctgcattgctcttgctgatgaatca
tgcgaggagccaaagattaggatgaacaaagtggtcaggtctaacttgagggttagactt
ggagatgttatctctgttcaccaatgccctgatgtcaagtatgggaagcgtgtccacatc
ttgcctgttgatgataccgttgaaggagtcactggcaacctctttgatgcttacctcaaa
ccttatttccttgaggcataccgcccggtgaggaagggcgatctcttcctagtcagagga
gggatgaggagtgtggagttcaaagttatagagacagatcctgctgagtactgtgttgtt
gctccggacactgagattttctgtgagggtgagccagtcaagagagaggatgaggaaagg
ctagatgaagtaggttatgatgatgttggtggtgtcaggaagcagatggctcagatcagg
gagcttgttgagcttcccttgaggcatccgcagctgttcaagtccattggtgttaagcca
cccaaggggattctgctttatggaccacctgggtccggaaagactctgattgctcgtgct
gtggctaacgaaactggtgcgtttttcttctgtatcaatggacctgagatcatgtccaag
ttggctggtgagagtgagagcaacctcaggaaagcgtttgaggaggctgagaagaacgct
ccttccatcatatttattgatgagattgactctattgcacccaaaagagagaagacgaat
ggtgaggttgagaggaggattgtgtctcagctcctcacgcttatggatggactgaagtca
cgtgctcatgttattgtcatgggagcaaccaatcgccccaacagtatcgatccggctttg
agaaggtttggaagatttgatagggagattgatatcggtgttcctgatgaaattggacgt
cttgaagttctcaggatccacacaaagaacatgaagctcgctgaagatgtggatctagaa
aggatctcaaaggacacacacggttatgtaggtgctgatcttgcagctctgtgcacagag
gctgccctgcaatgcatcagggagaagatggatgtgattgatttggaagatgactccatt
gatgctgagatcctcaattccatggcagtgactaatgaacacttccacaccgctctcggg
aacagcaacccatctgcacttcgtgaaactgttgtggaggttcctaatgtgtcttgggat
gacattggaggtcttgagaatgtcaagagagagctccaggagactgttcaataccctgtg
gagcacccagagaagttcgagaaatttggtatgtctccatcaaagggagttctattctac
ggtcctcctggttgtggcaaaacccttttggccaaagctatagccaacgagtgccaagca
aacttcatcagtgtcaaaggtcccgagcttctcactatgtggtttggagagagtgaagcc
aatgtccgtgaaatctttgacaaggctcgtcagtctgctccatgtgttctcttctttgac
gagctcgactccattgcgactcagagaggaggtggaggcggaggcgatgctggcggtgca
gcggatagagtcctgaaccagcttttgacagagatggatggaatgaacgccaagaaaacc
gtcttcatcattggagcgaccaacagaccagacattatcgattctgctcttctccgtcca
ggaaggctcgaccagctcatttacattccactaccggacgaggattctcgcctcaatatc
ttcaaggcctgcttgaggaaatctcctgttgctaaagatgtagacatcaatgctctcgct
aagtacacacagggattcagtggtgctgatatcactgagatttgccagagggcttgcaag
tacgccatcagagaaaacattgagaaggacattgaaaaggagaagaggaggagcttgaac
ccagaggcgatggaggaagatggagtggatgaagtatcagagatcaaagctgcacacttt
gaggagtcgatgaagtatgcacgcaggagtgtgagtgatgcagacatcaggaagtaccaa
gcctttgctcagacgttgcagcagtctagagggtttggttctgagttcaggttcgagact
aatactggttcaggtgcaaccactggagtagctgatccttttgccacgtctgcagctgct
gctgcagatgatgatgatctctacaactag
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