KEGG   Raphanus sativus (radish): 108861482
Entry
108861482         CDS       T06014                                 
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.1 isoform X1
  KO
K18643  katanin p80 WD40 repeat-containing subunit B1
Organism
rsz  Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:rsz04812]
    108861482
Cytoskeleton proteins [BR:rsz04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule severing proteins
     108861482
SSDB
Motif
Pfam: WD40 Katanin_con80 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz EIF3I Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_SPT8 WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_EML Beta-prop_DCAF4 Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_WDR75_1st WD40_RFWD3 NBCH_WD40 eIF2A Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_HPS5 Beta-prop_VPS8 VPS8_N Beta-prop_NOL10_N Ge1_WD40 WDR54
Other DBs
NCBI-GeneID: 108861482
NCBI-ProteinID: XP_018490857
UniProt: A0A6J0P1E2
LinkDB
Position
5:23360349..23366020
AA seq 957 aa
MAKRGYKLQEFLAHSGNVNCLSIGKKTSRFLITGGDDCKVNLWSIGKSTSLMSLCGHSSP
VDSVAFNSEEALVLAGASSGVIKLWNLQEAKVVRAFTGHISNCSALEFHPFGQYLASGSS
DTNLKIWDIRKKGCIQTYKGHTRGISTVKFTPDGRWLVSGGLDNVVKIWDITAGKLLHEF
KFHDGPIRSLDFHPLEFLLASGSADRTVKFWDLETFELIGSTRPEATGVRPIAFHPDGRT
LFCGLDDGLKVYSWEPVICRDSVDMGWSTLGDLCINENKFVGCSYYRNSVGIWVSDISKL
EPYGAGSEDKKECMVKRFSALEDQSSERKGSGSRGSSSPDYETKEIKNIYVDSIGGNLKA
GIRASEKQNATTCFGQAEDKSSRMHSVVDSDSGEESSHSRRESIASSKTSPGILLRPAHV
RKTLAKFEESVSAQSGTRKKSALDVEEETQTRNAEDSTIKGIMYKFEKALSSEPPTDEAN
RMLHKPPRAQRSSYNNYNESRRAMSVDSATYSDSKDGLEYSGDLPTGGNLCNEDVNNQHT
ATKTERVLSPEKPGDEQKIKVVSGRTRSLVEKFERGEKITHTEAENTNAVEQDPHKTSRQ
AGETPVVASTRRARSTPARVMPIVLNRDSNMKSDELPSTQPARTSSVPVMPMILNQPTND
EPSVTLTPSRTSPARTLPLTLDQTTNVAYGEVSVMSRRPRRTSSARVRPMLLSQTSHECL
VTSTRSDRTSPARVMPSKLNQTDDMTSDTCHSTSRRRASSSQMLATPTEIDQVVDMAQDE
ANVSQTDSDITENLMQTHEEFLSTLQSRLTKLQIVRHFWERSDVKGAIGALRKLTDQSVQ
ADVISILTDKIEILTLDMFSQLVPVLTSLLGSRTERPVNVSLDMLLKLVAVFGTVIRSTV
SAPRIVGVDLHADERIQICQVCSAGLHKIQRILPILARRGGLISRKAQELNLVLQQT
NT seq 2874 nt   +upstreamnt  +downstreamnt
atggcgaagcgtggatataagctgcaggagttcttggcacattccggaaatgtgaattgt
ctaagtatcggaaagaagacatcacggttccttataaccggaggagatgattgtaaggtc
aacctctggtcaatcggcaagtctacctctctcatgagtctttgtggacattcaagccct
gttgactcggtagctttcaactctgaagaagctttggtcctcgctggagcttcttctggc
gtgattaagctgtggaatctacaagaagctaaggtggttcgagcttttactggacacata
tcaaactgttctgctcttgagtttcatccgtttggccagtaccttgcatccggatcaagt
gacacaaatctaaagatttgggatatcagaaagaaaggatgcatccaaacatacaaaggt
cacactcgtggcattagtactgtcaaatttactcctgatgggcgttggttagtgtctggt
ggacttgataacgttgtaaagatttgggatataactgctggaaagctcctgcatgagttt
aagtttcatgatggacctatccgttccctagacttccaccctcttgagtttctcctagcc
tctggttctgcagacaggactgtgaaattctgggacttagaaacgtttgaattgattgga
tctactagaccagaggctactggagttcgcccaatcgcttttcatccagatggacgaacc
cttttctgtggattagatgacggcttgaaggtttattcatgggaaccagtgatatgccgg
gatagtgttgatatgggatggtcaacccttggtgacttgtgcatcaacgaaaacaagttc
gttggctgttcatattaccgaaattctgttgggatttgggtctcagatatatcgaaactt
gagccgtatggagctggatctgaggataagaaggaatgcatggtgaaaagattcagtgcc
ttggaggaccagtcgtctgagagaaaggggagtggctcaagggggagttcatccccggac
tatgagacaaaagagataaagaacatatacgttgactccataggtggaaatttgaaagcg
ggtattagggcgagcgagaagcagaatgcaacaacatgttttggacaagcagaggacaag
tcttccagaatgcatagtgttgtggatagtgatagtggggaagaatcttctcattcaaga
agggaatctatagcttcctcaaaaactagtccgggaatactgctaagaccagctcatgtt
agaaagactctagcaaagtttgaagaatcagtgtctgctcaatctggaactcggaagaag
agcgcattggatgttgaagaggagacacaaactcgaaatgctgaagactcaaccatcaag
ggaattatgtacaaatttgaaaaagctttatcatcggaaccaccaactgatgaagcgaat
cgtatgctgcataagccacctcgtgcacagaggtcatcatataacaactacaatgagtca
agacgagcaatgtctgttgattctgcgacttacagcgatagcaaagatgggttggagtat
tcaggagacttaccgacaggtggaaacttatgcaatgaggatgtaaacaaccagcacact
gccaccaaaactgaaagagttctttcaccagaaaagcctggtgatgaacagaaaataaaa
gttgtctccgggaggacacgctcattggttgagaagtttgagagaggagaaaaaattact
cataccgaagcagagaatactaatgcagtggagcaagatccgcataagacatcaagacag
gcaggtgaaactcctgtagtagcttctacacgacgagctagaagtactccagctcgagtg
atgcctatagtactcaaccgggatagtaacatgaaatctgatgagcttccttcaacgcaa
ccagctaggacttcttcagttccagtgatgcctatgatactcaatcagcctaccaatgat
gagccttctgtaacattaacaccatctagaacttctccggcccggacattgcccttgaca
ctggatcagacaacaaatgttgcatatggtgaggtttctgttatgtcaagaagaccacgc
aggacttcctcagctcgagtaaggcctatgttactcagtcagacatctcatgagtgtctt
gtaacatcaacacgttcagataggacttctccagcccgtgtaatgccatcaaaactcaat
caaaccgatgacatgacatcggatacatgtcatagcacgtccaggcgccgagctagctca
tctcaaatgctggctacacccactgagattgatcaggtggttgatatggctcaggatgag
gcaaatgtatcacaaactgatagtgacatcactgagaatctaatgcaaactcatgaggag
ttcttaagcactcttcaatctagattgacaaaattacaaattgttaggcatttttgggaa
cgtagcgatgttaaaggcgcgataggggctttgagaaagctgacagatcagtctgttcaa
gcagatgtgatcagtattttaacagacaagatagagattctcacattggatatgttctct
cagttggtccctgtcctcacaagcttattgggtagcaggacagagaggcctgtgaatgtc
tccttggacatgctcttgaagcttgtagcagtgttcggtacagttattcgctcaactgtc
tcagctccacggatagttggcgttgatcttcatgcggatgaaaggatacaaatctgccaa
gtttgttctgcgggactgcacaagattcaaaggattcttccaattctcgctagaagaggc
ggtctaatatcaagaaaggctcaggaactaaaccttgttcttcaacagacatag

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