Raphanus sativus (radish): 108861784
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Entry
108861784 CDS
T06014
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108861784
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108861784
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
DUF4957
Motif
Other DBs
NCBI-GeneID:
108861784
NCBI-ProteinID:
XP_018491238
UniProt:
A0A6J0P5G4
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Position
5:complement(3320018..3322205)
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AA seq
364 aa
AA seq
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MGNLHGLHRSHHHNSPFPPSTAPPSSYSPSAPHMTVEPYCGVDSSLRCLAGKAEGFGRGA
VGGLNGPICHVTSLADEGPGSLREACKRPEPLWIVFDVSGTINLSSFVNVSSHKTVDGRG
QRVKITGKGLRLKQSENVIICNLEFEGGVGPDADAIQIKPKSSTIWIDRCTLKNYHDGLI
DITRESTDITVSRCHFVNHNKTMLIGADPSHVTDRCIRVTIHHCFFDGTRQRHPRVRFAK
VHLFNNYTRHWSIYAVGAGVESQVYSQCNIYEAGEKKTVFKYITEKAADKEEADAGFIRS
EGDWFLNGAKSCLSHDKEHHVFSPTQHYSGWTVESSTEKLKKYIKHSTGWQNLPLPPDQL
PTTA
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
atgggaaacttacatggtcttcacagatcccatcaccacaactcccctttcccaccgtct
acagctcctccatcttcatattcaccttccgctccccacatgacggtggaaccttattgc
ggcgtagactcaagcctccgctgcctcgccggaaaggccgaaggtttcggccgcggcgcc
gttggtggtcttaatggtccgatttgccacgtcacttctttagctgatgaaggtccagga
tcgttaagagaggcttgtaagaggccagaaccgttgtggattgtgttcgatgtgtcggga
acgatcaatctatcttcgttcgtgaacgtatcatcgcacaaaacggtagacgggagaggt
caaagggtgaagataacggggaaagggttaaggctaaaacaaagtgaaaacgttataata
tgtaaccttgaattcgaaggtggtgtaggaccagacgcagacgctattcagatcaaacca
aaatcaagcaccatttggatcgatcgttgtactctcaagaattaccatgatggtttgatt
gatatcacacgagaaagcactgacatcactgtctcaagatgccatttcgtgaaccacaac
aagacaatgctgattggcgcggacccaagtcacgtgacggaccgatgcattagagttacg
attcaccactgcttcttcgacggtacacgtcagcgacaccctcgtgttcgcttcgcaaaa
gtccatctcttcaacaactacactcgtcattggtccatctatgccgttggagccggcgtt
gagtctcaggtatattctcagtgcaacatatatgaagctggtgagaagaagaccgtcttt
aagtacatcactgagaaggctgcggataaagaggaagccgatgctggttttataagatca
gaaggggattggttcttgaacggcgccaagtcgtgtcttagccacgacaaagagcaccac
gtgttctctccgactcaacactattctggatggaccgtcgagtcttcaacagagaaactc
aagaaatatattaaacactcgaccggctggcagaaccttccgcttccacctgaccaactt
ccaaccacagcgtaa
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