Raphanus sativus (radish): 108861947
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Entry
108861947 CDS
T06014
Name
(RefSeq) phytochrome B
KO
K12121
phytochrome B
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
108861947
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
HisKA
PAS_9
PAS_4
PAS_8
sCache_3_2
Motif
Other DBs
NCBI-GeneID:
108861947
NCBI-ProteinID:
XP_018491448
UniProt:
A0A6J0P5Y1
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Position
5:6911604..6916177
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AA seq
1169 aa
AA seq
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MVSGSGGSGRGRGGGEASSSGQRKEQAQSSGTKSLRPQQQNQQRPPQKTESVSKAIQQYT
VDARLHAVFEQSGESGKSFDYSQSLKTTTYGSSVPEQQITAYLSRIQRGGYIQPFGCMIA
VDESNFTIIGHSENAREMLGLTPQSVPSLERPEILAMGTDVRSLFTSSSSVLLERAFVAR
EITLLNPVWIHSKYTGKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAI
SQLQSLPGGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEHGEVVAESRREDLEPYIGLH
YPATDIPQASRFLFKQNRVRMIVDCHATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYM
ANMGSIASLAMAVIINGNEEDGSSVVAGGRSSMRLWGLVVCHHTSSRCIPFPLRYACEFL
MQAFGLQLNMELQLALQMSEKRVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAF
LYHGGYYPLGVAPTEAQIKDVVEWLLANHADSTGLSTDSLGDAGYPGAAALGDAVCGMAV
AYITNRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSQPWET
AEMDAIHSLQLILRDSFKESEAAMNSKNADGAVQPYSMGGERGIDELGAVAREMVRLIET
ATVPIFAVDVGGCINGWNAKIAELTGLSVGEAMGKSLVSDLIYKENEETVDKLISRALRG
DEDKNVEIKLKTFSPELQGKAVFVVVNACSSKDYSNNIVGVCFVGQDVTGQKVVMDKFIN
IQGDYKAIVHSPNPLIPPIFAADENTCCLEWNTALEKLTGWSRSEVIGKMLVGEVFGSYC
RLKGPDALTKFMIVLHNAIGGQETDKFPFPFFDRNGKFVQALLTANKRVNLEGKVIGAFC
FLQIPSPELQQALAVQRRQDTECFTKAKELAYICQVVKNPLSGLRFTNSLLEATDLNEDQ
KQLLETSVSCEKQISRIVSDMDLERIEDGSFELQRTEFLLGSVINAIVSQAMFLLKERGV
QLIRDIPEEIKSIQVYGDQTRIQQLLAEFLLSIVRYAPSHEWVEIHLSQVPKQMADGFYS
IRTEFRMACPGEGLPPELVRDMFHSSRWTSPEGLGLSICRKILKLMNGEVQYIRESERTY
FLIILELPVPMKRPLSTASGSGDMMLMMP
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atggtttccggaagcggcggaagtggtcggggccgcggcggaggagaagcatcgtcgtca
ggtcaaaggaaagaacaagctcaatcctctgggacgaagtctctcaggccacaacaacag
aaccaacaacgaccgccgcaaaaaacggaatcagtgagcaaagccatccaacaatacaca
gtggacgcgagactgcacgccgttttcgaacaatcaggggagtcaggcaagtcgttcgac
tactcgcagtccctcaaaacgacgacgtacggctcatcagtccccgagcagcagatcacg
gcctacctctcgaggatccagcgcggcggctacatacagcccttcggatgcatgatcgcc
gtcgacgagtccaacttcaccatcatcggccacagcgagaacgcgcgggagatgctaggc
ctcacccctcagtccgtccccagcctcgagaggcccgagatcctcgccatggggaccgac
gtccgctctctcttcacctcctccagctccgtcctcctcgagcgcgccttcgtcgctcgg
gagatcactctcctgaatcccgtctggatccactccaagtacaccggtaaaccgttttac
gcgatcctccacaggatcgacgtcggagttgtgatcgatcttgagccggctagaacggag
gatccggctctctcgatcgccggagcggttcagtctcagaagctagccgttcgcgcgatc
tcgcagttacagtctctccccggtggagatattaagctgttatgtgacactgttgtggag
agtgtgagagacttgactggatacgaccgtgtgatggtgtacaagttccacgaagacgag
catggagaggttgttgcggagagcaggagggaggatctagagccttacattggtttgcat
tatccagcgactgatattcctcaagcgtccaggttcttgtttaagcagaaccgtgtgcgg
atgatcgtcgattgccacgccactcccgttctggtggtgcaggacgataggctgactcag
tcaatgtgccttgttggttcgactcttagggctcctcacggttgtcactctcagtatatg
gctaacatgggatctatcgcgtctttagcgatggcggttataataaacggtaacgaagaa
gatgggagtagtgttgttgcgggtgggagaagctctatgaggctttggggtttagtcgtt
tgccatcacacttcttctcgatgcataccgtttccgttacggtacgcttgcgagtttctg
atgcaggcgtttggtttacagttgaacatggagttgcagttagctttgcaaatgtcggag
aaacgcgttttgaggacgcagacgctgttgtgcgatatgcttctccgcgactcgcctgct
ggaatcgttacgcagagtcctagtatcatggacttggtgaaatgcgacggtgcggcgttt
ctgtaccacgggggttattacccgttgggtgttgctccgactgaggctcagattaaagac
gttgtggagtggttgcttgcgaatcacgctgattcgactgggttaagcactgatagttta
ggtgatgctggatatcctggtgcagctgcgttaggggatgctgtgtgcggtatggcggtt
gcgtacattacgaatagggatttccttttctggtttcgttctcatacagctaaagaaatc
aaatggggaggcgctaagcaccatccagaggacaaagatgatgggcaacggatgcatcct
cgttcgtctttcaaggcttttcttgaagttgttaagagcaggagtcagccatgggaaact
gcggaaatggatgcgattcattcgctccagctgattctaagggactcttttaaagaatct
gaggcagctatgaactctaaaaatgcagatggtgcggttcagccttatagtatgggagga
gagcggggaattgatgagttaggtgctgttgcaagagagatggttagactcatcgagaca
gcaactgtgcctatatttgctgttgacgttggaggatgcatcaatggatggaacgctaag
attgcagaattgactggtctctcggttggagaagctatggggaagtctctggtttctgat
ctgatatacaaagagaatgaagaaactgttgataagctcatttctcgtgcgctcagaggg
gacgaggataaaaatgtggagataaagctgaagactttcagccctgaactacaagggaaa
gctgtttttgtggttgtgaatgcgtgttcgagcaaggactactctaacaacattgttggc
gtctgttttgtcgggcaggatgttactggtcagaaagtcgtaatggacaagttcatcaac
atacaaggagactacaaagccattgtccatagcccaaacccgctgattccaccaatcttt
gcggcagacgagaacacgtgttgcctggagtggaacaccgcgttggaaaagctcactggt
tggtctcgcagtgaagtgattgggaaaatgcttgttggggaagtgtttgggagctattgc
aggctaaagggtccggatgcattaaccaagttcatgattgtattgcataatgcgatcggt
ggccaagaaacagacaagttccctttcccgttctttgaccgtaacgggaagtttgttcag
gctctattgactgcaaacaagcgggtaaacctcgaaggaaaggttattggggctttttgt
ttcttgcagatcccgagtcctgagctgcagcaagctttagcagtccaacgaaggcaagac
acagagtgtttcacaaaggcgaaagagctagcttacatttgtcaagtggtaaagaatcct
ttgagcggtttgcgtttcacaaactcgttattggaagctacagacttgaacgaggatcag
aaacagcttctcgaaacaagtgtttcttgcgagaaacaaatctcaaggattgtcagtgac
atggatcttgaaaggattgaagacggttcgtttgagctacaaagaacagagttcttactc
ggaagtgtcataaacgcgattgtaagccaggcgatgttcttattaaaggagagaggtgtt
cagctaatccgtgacattcccgaagagatcaaatccatacaagtttatggagaccagaca
aggattcaacaactcctagctgagtttctgctgagtatagtccggtatgcaccgtcccat
gagtgggtggagatccatcttagccaagttccaaagcaaatggctgacggattctactct
atccgcacagaatttagaatggcgtgcccaggtgaaggtctgcctccagaactggtccga
gacatgtttcatagcagcaggtggacgagccctgaagggttaggtctaagcatatgtaga
aagatcctaaagctcatgaacggtgaagttcagtacattcgagagtcggaacgaacctat
ttcctaatcattctcgagctccccgttcctatgaaacgccctttgtcaaccgctagcgga
agcggcgacatgatgttgatgatgccatag
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