Raphanus sativus (radish): 108862057
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Entry
108862057 CDS
T06014
Name
(RefSeq) nuclear cap-binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03013
Nucleocytoplasmic transport
rsz03015
mRNA surveillance pathway
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108862057
09122 Translation
03013 Nucleocytoplasmic transport
108862057
03015 mRNA surveillance pathway
108862057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108862057
03041 Spliceosome [BR:
rsz03041
]
108862057
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
108862057
Spliceosome [BR:
rsz03041
]
Common components
Common spliceosomal components
Cap binding complex
108862057
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like
MIF4G
MIF4G_like_2
Motif
Other DBs
NCBI-GeneID:
108862057
NCBI-ProteinID:
XP_018491583
UniProt:
A0A6J0P687
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All DBs
Position
5:complement(31352565..31358528)
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AA seq
845 aa
AA seq
DB search
MSNWKTLLLRIGEKGPEYGTSSDFKDHIETCFGVIRREIERSGDQVSPYLLQCAEQLPHK
IPLYGTLIGLLNLENEDFVRKIVESVQANFQVALDSGNCNSIRILLRFMTSLLCSKVIQP
ASLIVVFETLLSSAATTVDEEKGNPSWQAQADFYVICILSSLPWGGAELAEQVPDEIERV
IVGIQAYLSIRKHSSSSGLNFFLKGESENSHSEKDFVEDLWDRTQSLASNGWKLDSVPRP
HLSFEAQLVAGKFHELRPIKCMEPPSPPSDLSRESIGKQKHDALMRYPQRIRRLNIFPAT
KTEDVQPIDRFVVEEYLLDVLLYLNGCRKECASYMANLPVPFRYEYLMAETLFSQILLLP
QPPFKTLYYTLVIMDLCKALPGAFPAVVAGAVRALFEKMSDLDMESRTRLILWFSHHLSN
FQFIWPWEEWAYVLDLPKWAPKRVFVQEVLQREVRLSYWDKIKQSIENASALEDLLPAKA
APAYRYSVEEGKEKTEEHQLSAELNRKVKEKQSARDMISWIEETIYPVHGFEVTLTVVAQ
TLLEIGSKSFTHMVTVLERYGQVFGKLCPDNDKQVMLLSQVSAYWKNNAQMTAVAMDRMM
GYRLVSNQAIVRWVFSPENVDQFHVSDQPWEILGNALNKTYNRISDLRKDISNITKNVLV
AEKASANARAELEAAESKLSLVEGEPVLGENPGKMKRLRSTVEKTGEAEVSIRESLEAKE
ALLNRALSETEALLLLLFQSFSAVLKERLPEATKARSLEDLKPEDENSSAMEVDTENGNP
KKKSEMGEREQWCLTTLGYLTAFTRQYANEIWPHMEKLKREVFSGEDVHPLYLQAIFSAL
QIPLQ
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgagcaattggaagactcttctccttcgaatcggcgagaagggccccgagtacggcacc
tcctccgacttcaaagaccatatcgagacttgttttggtgttatccgtagagaaatcgag
cgttccggggaccaagtttccccttatctactgcaatgtgctgaacaattgcctcataag
attcccttgtatgggactctgattggtttgttgaacctggagaacgaagactttgtccgg
aagatagtagaaagtgtccaagctaatttccaggtcgctttggattctggaaactgcaac
agcatccgtatattgctacgctttatgacttccctgttgtgcagtaaggttattcaaccc
gcctctttgattgtcgtgttcgaaacgctgttgtcatccgccgccaccactgtggatgaa
gagaaaggaaacccatcatggcaggcacaagctgacttttacgttatatgcatcttgtca
agcctcccgtggggaggagcagaactcgctgagcaagttcctgatgagattgaaagagtg
atagtcgggatacaagcgtatttgagcatccgaaagcattcttcatcctctggtttaaac
ttttttctcaaaggagaatctgaaaatagtcattctgaaaaggatttcgtggaggatcta
tgggatcgaacacagtctctagcttccaatggatggaaacttgacagtgttcctaggcct
catctctcgttcgaagctcagcttgttgctggaaaatttcatgagctacgccccattaaa
tgtatggaaccaccaagtccaccttctgatctttcgagggaaagtattggcaagcaaaag
catgacgctttgatgagatatcctcagaggatccgcaggctgaatatatttccagctact
aagactgaggatgtacaacctattgatcgctttgtcgttgaggagtatttactggatgtg
ctcctctatttaaatggatgtcggaaggagtgcgcttcctacatggctaatcttcctgtg
ccttttcggtatgagtatcttatggcagagacactattttctcagatactgctactacca
cagccaccgttcaagactctttattatacactcgtgattatggatctttgtaaggctctt
ccgggtgcctttcctgctgttgttgctggcgctgttcgtgcactctttgagaaaatgtcc
gaccttgacatggaatccaggacacgccttatcctctggttttctcaccacttatccaac
ttccaattcatctggccgtgggaagagtgggcttatgtgttggaccttcccaaatgggcc
cctaagcgtgtatttgttcaggaggttctccaaagagaagtacgcttgtcttactgggat
aagattaagcagagcatcgagaatgcgagtgccctagaagacttgcttccagcaaaggct
gctccggcttataggtattccgtggaagagggtaaagagaaaacagaagagcatcagttg
tcagctgaattgaacaggaaggtcaaggaaaaacagtctgcacgtgacatgatatcgtgg
attgaagaaacgatatatccagttcatggttttgaagttactcttacagtagttgcacag
accttactcgagatcggatcaaaaagtttcactcacatggtcactgtcctagagcggtat
ggccaagtatttgggaaactttgtcctgataatgataaacaggtgatgctattgtcgcaa
gtgagtgcgtactggaaaaacaatgcacaaatgacggccgtggcaatggataggatgatg
gggtatagactggtatcgaatcaggcgattgtgagatgggttttctctccggagaatgtt
gatcagtttcatgtgtctgatcagccatgggagatacttgggaatgcacttaacaagact
tataatcgtatctctgatttgaggaaagacatatcaaacattacgaagaatgttttggtt
gctgagaaagcttcagcaaacgcacgagcagagctggaggctgcagagagcaaactttcc
ctggtggagggtgagccagtccttggtgaaaatccagggaagatgaagcgtttgagatca
acggtggagaagacaggggaggcagaggtgtctattcgggaatctctagaggcaaaagag
gctcttcttaacagagcgctctctgaaactgaggctctactgctcctgctgttccagagt
ttctcggcagtcctgaaggaacggcttccagaagcaacgaaagcgagatcgttggaggat
ctaaaacctgaagatgaaaactcgtctgctatggaggtggacacagaaaatggaaaccca
aagaaaaaatctgagatgggtgagagagaacagtggtgcttaacgacacttggatatctt
acggcatttacaagacaatatgcgaacgagatatggcctcacatggagaagttgaagagg
gaggtgttctctggagaggatgttcatcctctctacctccaagccatattctctgcactc
caaatccctttacaataa
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