Raphanus sativus (radish): 108862085
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Entry
108862085 CDS
T06014
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108862085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
108862085
Enzymes [BR:
rsz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108862085
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
108862085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
108862085
NCBI-ProteinID:
XP_018491618
UniProt:
A0A6J0P6B6
LinkDB
All DBs
Position
5:26333474..26341123
Genome browser
AA seq
1650 aa
AA seq
DB search
MAQSTTEGASQVVKSVRFSFMTEEDVEKHSVMQVVNPVLLDNVLRPVPGGLYDPLMGPME
DRSTCKTCDQLGFDCSGHCGRIKLVCPIYHPLLFTHLFNLLQRTCFFCHHFMVKKEVVAR
CVSQLKLIMKGDVVSAKQLSLKPSNSSEEREDSKLTGSDEECEEDSDMGKQRWTSLQFAE
VSDVLNQFLRLKSRKCESCKAKPPKLEKPTFGWVRLDGMSARDIGANVMRGVKLKKSANS
GESSDEGEDSGISGLQEVEDGAKKKKGKSSKASKDYGDLKKASKRDLLPIEAKEILEGLW
DNEYEFCSFIGDLWQSGSEKTDCSMFFMESVLVPPTKFRAPTKGGDSVMEHPQTVGLNNV
LQANMALENAFTNKLDRSKTSSRWMSLQESVNVLFDSKTASVKSQREGTGICQLLEKKEG
LFRQKMMGKRVNHACRSVISPDPFIAVNDIGIPPCFALKLSYPERVTPWNVEKLRQAIIN
GPDIHPGATYYSDNVSTMKLPANKKARIAIARKLLSSRGVTTELGKTCDVNFEGKIVYRH
MQDGDVVLVNRQPTLHKPSLMAHIVRVLKGEKTLRLHYANCSTYNADFDGDEMNVHFPQD
EISRAEAYNIVNANNQYARPSNGDPLRALIQDHIVSSVLLTKGDTFLDKDEFNQLLFSSG
VTDMVLGSFSGRSGKKVTQSASNADLLIVTPAILKPVPLWTGKQVITAVLNEITKGHPPF
SVEKSTKLPVDFFNSRSREAKSKSGESNKKTKKHDFNEDKLLIRKNEFVRGVIDKAQFAD
YGLVHTVHELYGPNAAGNLLSVFSRLFTVFLQTQGFTCGVDDLIILKDVDEKRTNQLREC
EGVGEKVLRKTFGIDVNAQIDPEDMKSRIERVLYEDGELALASLDRSVVSELNQCSGKGV
MNDLLSDGLLKTPGTNCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLP
CFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNL
ESLKVNYDCTVRDADGSIIQFQYGEDGVDVHRSSFIEKFKEMTINQDMFLQRCSEDMLSG
SSSYITDLPITLKKGAEKFVEAMPMKERIASKMVRQEDLLKLVKSKFFASLAQPGEPVGV
LAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAADIKTPIMTCPLLKGKT
KDDASQITDKLRKITVADIIKSIEVSVIPFAVHGGEVCSIHKLKINLYKPEHYPKHTDIT
EEDWEETMTVTFLRKLEDAIETHMKMLLRIRGIKVEKDSGPKSGNETDNDDSESGKKTGG
DDDDDDDEGEDKEADDLGADAQKEKQEATDEQDYEESDDDEKNEPSSVSGVVDPETDDDD
EDENAEVSKEDKEDAVEAKKEVKKNVQEGSKKKRQRFVSGEKDRHIFAEGKGKTFEVHFK
FHKNEPHILLAQVAQKTAQKVYIQNLGKIERCTVANCGDPQVIYYGDNPKERAEISNEEK
KASPALHASGVDFAGLWEFQDKLDVRYLYSNSIHDMLNTFGVEAARETIIREINHVFKSY
GISVSIRHLNLIADYMTFSGGYRPMSRMGGIAESTSPFCRMTFETATKFIVQAATYGEVD
RLETPSARICLGLPALTGTGCFDLLQRMDL
NT seq
4953 nt
NT seq
+upstream
nt +downstream
nt
atggctcaatccaccacagagggagcttcccaagtggtgaaatccgttaggtttagcttc
atgacagaggaagatgtcgaaaagcacagtgttatgcaagttgtaaaccccgtcttgctc
gataacgttttgagacctgtccctggtggtctctatgatcctcttatgggtccaatggaa
gatagatcaacttgtaagacgtgtgatcagctcggttttgattgctcaggacattgtggg
cgtataaagcttgtctgtcctatctaccaccctttgctgttcactcaccttttcaatctt
ttgcaaaggacttgtttcttctgtcatcactttatggtcaaaaaggaagtggttgcaaga
tgcgtctctcagttgaaactcatcatgaaaggtgatgtagtttccgctaagcagctgtct
cttaaacccagtaattcatctgaagagcgcgaagattctaaactcactggttcagatgaa
gaatgtgaagaagattctgacatgggaaaacagagatggacatctcttcagtttgctgaa
gtctctgacgtcttgaatcagtttcttaggttgaaatcaagaaagtgtgaatcttgcaaa
gcaaagcctcctaaactagagaagcctaccttcggatgggttcgcttggatggtatgtca
gcgagagacattggagctaacgtaatgcgaggggttaagctaaagaagtccgctaacagt
ggggaaagctctgacgaaggtgaagacagtggtatcagtggattacaagaagttgaagat
ggtgctaaaaagaaaaaaggaaaatcttcaaaagcatctaaagactatggagatctcaag
aaagcctctaaaagagaccttttgccgattgaggccaaggaaatcttagaaggtttgtgg
gataatgagtatgagttttgctccttcattggtgatctttggcagagtggatctgaaaaa
acggactgttctatgttctttatggagagtgttcttgtgccgcctactaaatttagagct
ccaacaaaaggaggtgatagcgttatggaacatcctcaaaccgtagggctaaacaatgtc
ttgcaagccaatatggcccttgagaatgccttcactaacaaattagatcgatccaagaca
tcttccagatggatgagtcttcaagaatcagtcaatgtcctgtttgatagcaagactgcc
tcagttaaaagccagagagagggtactggtatatgtcaattgctggagaagaaagagggt
ctgtttcggcaaaaaatgatgggaaagagagtgaatcatgcatgcagatctgtgatatct
ccagatccttttatcgctgtcaatgacattggaattcctccttgctttgctttgaaattg
agctatcctgagagggtgactccttggaatgttgaaaagttgaggcaggcaatcattaat
ggtcctgacattcacccgggagcaacatattactctgacaacgtatctacaatgaagctg
cctgctaacaaaaaagcacgaatagcaattgcaagaaagctactgtcctcacgaggagtc
actactgaacttgggaaaacttgtgatgtcaactttgaaggtaaaattgtctatcgacat
atgcaagatggtgatgtcgtccttgtgaatcgtcagccaacattacataaacctagtctt
atggctcacattgtccgtgttctcaagggggaaaaaacacttcgtctccattatgcaaat
tgcagtacatacaatgcagattttgatggggatgagatgaatgtgcattttccacaagat
gagatttcacgagctgaggcctacaatattgttaatgccaacaaccaatatgccaggcct
tctaatggtgatccacttcgagctttaattcaggatcacattgttagttcggttttactt
actaaaggggacacctttttggacaaagatgaattcaatcagcttctcttcagttccggc
gtgactgacatggtactcggttctttttctggacgatctggcaagaaagtcacacaatca
gcttctaatgcagacctgttgattgtcacgcctgccattttgaaaccagtacctctttgg
accggaaagcaggtcatcacggcagtgttaaatgagataaccaaaggtcatcccccattc
agcgtagagaaatctacaaaacttccggttgacttcttcaattctagatcaagagaagca
aaatctaaaagtggagaatccaacaaaaagaccaagaagcatgattttaatgaagataaa
ctgctcatcagaaaaaatgaatttgtccgtggcgtgattgacaaggctcagtttgcggac
tatgggttggttcatacagtgcatgagctctatggtccaaatgctgcaggaaacctgctt
tctgtttttagtcgtctcttcacagtcttccttcagactcaaggtttcacatgtggagtt
gatgatcttattattttgaaagatgtggatgaaaagaggacaaaccaacttcgagaatgt
gaaggggttggtgaaaaagtactccgtaagacctttggcattgatgttaatgctcagata
gatcctgaggacatgaaatccagaattgagcgagttctgtatgaggatggcgaacttgct
ttggcatcactggataggagcgtcgtaagtgagctcaaccagtgttcaggcaagggggtg
atgaacgatttgctctctgatgggttgttgaaaacacctggaacgaattgtatctctctg
atgacaatatctggagctaagggtagtaaggttaatttccagcaaatttcttctcacctt
ggccagcaagatttagaaggaaaaagagttcctcgaatggtttcggggaagacattacct
tgcttccacccatgggattggtcacccagagctggaggttttattagtgacagattcctt
agcggtcttcgcccccaagaatactactttcattgtatggctggacgagaagggttagtt
gatactgcagtgaagacatcacgtagtgggtatctgcagagatgtttgatgaaaaatctt
gagagcctgaaagtcaactatgattgtacagtacgggatgctgatgggtccatcattcag
ttccaatatggtgaagatggcgtggatgttcatcggtctagcttcattgaaaagttcaaa
gaaatgacaataaatcaagatatgttccttcaaagatgtagcgaagacatgctgtctgga
tcgagtagttacataacagatcttcctattactcttaagaagggagctgagaagtttgta
gaggcgatgcctatgaaagaacgtattgcttctaaaatggtgagacaggaagatcttctg
aagctggtcaagtcaaaattctttgcaagtctcgcccagccaggggagcctgtaggtgta
cttgctgcacaatctgtaggagagccatcaacacagatgacgttgaatactttccatctt
gctggacgtggagagatgaatgtgacactcggaatcccacgtttacaagagatcttgatg
actgctgctgcagacattaagacacccatcatgacttgcccgttgctgaagggtaaaaca
aaggatgatgcaagtcaaattactgataagttgaggaagatcacagtagcagatattata
aagagtatagaagtgtccgttataccatttgcagttcatgggggtgaggtttgcagtatc
cacaagcttaagataaatctgtataagccagagcattatccaaagcacacagatattact
gaagaagactgggaagagacgatgacggttacgtttttgaggaagctggaagacgctata
gagactcacatgaaaatgctccttagaatcagaggcataaaggttgagaaagacagcggt
ccaaaatcaggaaacgaaacggataacgatgattccgagagtggaaagaagaccggaggc
gatgatgatgatgatgatgatgagggagaggataaagaggctgatgatcttggtgcagat
gcgcagaaagagaagcaggaagcgacagatgagcaggattacgaggaaagtgacgacgat
gagaagaatgaaccatcttcggttagtggagtagttgaccctgagacggatgatgatgat
gaggatgaaaacgcagaagttagcaaggaagacaaggaagatgctgttgaagcgaagaaa
gaagtaaagaagaatgttcaagaaggtagtaaaaagaagagacagagatttgtcagtggt
gaaaaagacagacatatctttgctgaaggcaaaggaaagacatttgaggtccatttcaag
tttcataaaaacgagcctcatatattacttgctcaggttgctcagaaaacagcgcagaaa
gtttacatccagaaccttggaaagatcgaacggtgcacggtggctaactgtggtgatcct
caggtgatatactacggagacaatccaaaggagagagcagagatctccaacgaagaaaag
aaagcctcaccagctctccacgcgtcaggagtcgatttcgccggtctctgggagtttcaa
gataagctcgacgtcaggtacttgtacagcaacagcattcacgacatgctcaacactttt
ggagtggaagcagcgagagagacgataatcagggagataaaccacgttttcaaatcttac
ggtatctccgttagcatcagacacttgaacctcatcgcggactacatgacgttctctggt
ggataccgtccgatgagccgtatgggaggaatcgcggaatcaacttctcctttctgcagg
atgacgtttgagacggcaactaagttcattgtccaagcggctacttatggagaagtggac
aggcttgaaactccctcggctagaatatgtcttggcttgcccgctctcacgggaacgggt
tgcttcgacttgttgcagagaatggatctctga
DBGET
integrated database retrieval system
