Raphanus sativus (radish): 108862187
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Entry
108862187 CDS
T06014
Name
(RefSeq) nuclear pore complex protein NUP93B
KO
K14309
nuclear pore complex protein Nup93
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108862187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108862187
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108862187
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Nic96
Motif
Other DBs
NCBI-GeneID:
108862187
NCBI-ProteinID:
XP_018491742
UniProt:
A0A6J0P3V2
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Position
5:complement(26125442..26130374)
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AA seq
861 aa
AA seq
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MANDQEMSGWTDLLHSSTKLLEQAAPSSQFPPLQRNLDQLEALSRKLKAKTLRNEAPSQS
IAATRLLSREGINAEQLSRDLKSFELKTTFEDVFPAEATSVEEYLQQVHEMAMVSAIQEA
QKDNVRSFNDYMLKVLEEDCRKEKRDFLQSRSKISLVPKTKLIDTSRHTHAGQMVPVTSS
PQVSSNTGTELASLANRPIHEKKAHVYAEVVKKLNFSRERGLPFKPATSFKDAYESLGID
LTRGKSVNVQKLWQLIQAMTGEDSAVRKDVSKRMSLVIGARRHLECGHQKHIMDTIQSHP
TQAALGGSVGNLQRIRAFLRIRLREYGILDFDSGDARRQPPVDTTWQQIYFCLRSGYYEE
AREIAQSSRSSQQQFAPLLTEWITTGGTVTANTAAIASEECEKLFRLGDRLGQTTYDKKK
LLLYTIISGSRRQIDRILREFSTLFNTIEDFLWFNLSCIRDVASGSSSLVFNDGLVPYSL
DDLQAYLNKFEPSYYTKNGKDPLVYPYVLLLSNQLLPAIMYMSQEAGDEGYNIDAVHIAI
SLVDHSVISEGSGTGHKLSVMDANAEASSLIRQFGSMYLHHGDLQMTLEYYAQAAIAVGG
GQLAWSGRSNVDQQRQRNLMLKQLLTEILLREGGINFLLGARGSGEEGELGRFFPDSKLR
QQFLIEAAHQCQDAGLFEKSIEIQKRVGAYAAALETINKCLSEAICSLLRGRSDGESRTA
GLVLSGNEILDTYRYCPEIGQERDRVNEQETILRELEAILSIHKLARLGNHLEALKEAAK
LPFLHLDPRLSDTTPDEFQRASPYFKTCVPDLLKVVLTCLDNVPDRDGSIRVMRSKIAGF
LASNTHQNWPRDLYEKVARSF
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgaccaggagatgagtggatggactgatcttctccattcttctacgaagctt
ctcgagcaagcggctccgtcttctcagttccctcctcttcagaggaatttggatcaattg
gaagcgttgtcgaggaagctcaaggctaaaaccttaagaaacgaagctccttcacagtct
attgctgccactagactactttcacgtgagggaatcaatgcagagcaattgtctcgcgat
ctaaagtcgttcgagttgaagacgacatttgaagatgtattccctgccgaggcaacaagt
gttgaagaatacctgcaacaggttcatgaaatggctatggtatcggctatacaggaggcc
cagaaagataatgttcgcagctttaatgattatatgctgaaagtattggaggaggactgt
agaaaagaaaaacgtgacttccttcaaagtcgtagcaaaatttcattggtacctaagacc
aagttgatcgatacaagcagacacactcatgctggtcagatggtgcctgtgacttcgagt
cctcaagtatcttcaaacactggaacagaacttgcgtctctggctaacagaccaattcat
gagaagaaagcacatgtctatgcagaggttgtgaagaaacttaatttttcaagagaacga
ggcttgccatttaagcctgcaacatcgttcaaagatgcttatgaaagtctagggattgat
ttgactcgtgggaaatcagtcaatgtgcagaaactatggcaacttattcaggcaatgacg
ggtgaagattcagcagtacgcaaagatgtttccaagaggatgtccctcgtgataggtgca
agacgccacttggaatgtgggcatcagaaacatataatggatacaattcaaagtcatcct
acacaagctgctcttggtggatctgttggaaatttgcaaagaattcgtgcctttcttcgg
attcgtctacgggagtatggaattttggattttgattcaggtgacgcgcgtagacagcct
ccagttgatactacttggcagcagatatatttttgcttgagaagtggctactatgaggag
gcaagagaaatcgcccaatcatctcgatcatctcaacaacagtttgctccgctgcttaca
gagtggattaccacaggtggtactgtaactgcaaataccgccgctattgcttctgaagaa
tgtgagaaattgtttaggttgggtgatcggttgggccaaacaacatatgacaagaagaaa
ctcctactctacactatcatatctggttcccgaaggcagattgatcgcatcttgagggaa
ttttcgacgcttttcaacacaatagaagactttctctggttcaatttatcatgcatacgt
gatgttgctagtggatcttcatctttggtcttcaacgatgggctagttccttacagttta
gatgaccttcaggcttatcttaataagtttgagccttcttattacactaagaacggcaaa
gaccctctggtttacccatatgttctgcttcttagcaatcagttactaccggcgatcatg
tacatgtctcaagaagcaggagatgaagggtataacatcgacgctgtccatatagctatt
tcgctagtggaccattccgttatctctgaaggctctgggactgggcacaaacttagcgtg
atggatgcaaatgctgaggcgtcgagcctgataaggcaattcgggtcgatgtatttgcat
catggtgatctgcaaatgacgctggaatactatgcacaagctgctattgcagtaggaggg
gggcaactagcttggtccgggagaagcaatgttgatcagcaaaggcaaaggaacttgatg
ctgaagcaacttcttactgagattctgttacgagaaggtggtattaactttctgcttggt
gctagaggttccggtgaagaaggcgagcttggaagatttttccctgattcaaaactgagg
cagcagttcttgatcgaagctgcgcatcaatgtcaagacgctggattgtttgagaaatct
atagaaatacagaagagagttggtgcctatgcggctgccttggaaacaataaacaagtgt
ctgtctgaagccatttgctctcttctccgtggaaggtcagatggtgaaagccgaacagca
ggactcgttctctcaggaaacgagattctcgacacctacagatactgccctgaaatcggt
caggaaagagatcgggtcaatgaacaagaaacaatactacgagagcttgaggcaatactg
tcgatccacaagttggccagactaggcaatcatctagaggccttgaaagaagccgctaaa
ctcccgttccttcatctcgatccgagactctcggacacaaccccggacgagttccagaga
gcgtccccttacttcaagacctgcgtacctgatttactaaaagttgttttgacttgtctg
gacaacgtacccgaccgtgacgggtctatccgagtcatgagatctaagattgctggtttt
cttgcaagcaacacacatcagaactggcctcgagacttgtacgagaaggtggctcgaagc
ttttga
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