Raphanus sativus (radish): 108862306
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Entry
108862306 CDS
T06014
Name
(RefSeq) probable pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108862306
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108862306
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
108862306
NCBI-ProteinID:
XP_018491897
UniProt:
A0A6J0P4A5
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Position
5:complement(2557926..2561800)
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AA seq
416 aa
AA seq
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MAVTKLILFASALLVATLFIGVNSSRSNETWHEHAVEKPEEVAAMVDMSIRNSTERRRLG
YFSCATGNPIDDCWRCDRKWQLRRKRLADCSIGFGRNAIGGRDGRYYVVTDPNDDDPVNP
VPGTLRHAVIQEEPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHVANGACLTIQYVT
NIIVHGIHIHDCKPTGNAMVRSSPTHYGWRSMADGDAISIFGSSHIWIDHNSLSNCADGL
VDAVMSSTAITVSNNFFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRH
GYFHVVNNDYTHWEMYAIGGSAGPTINSQGNRFLAPVNPFAKEVTKREYTGQSKWKHWNW
RSEGDLFLNGAFFTRSGAGAGAGYARASSLSAKSSSLVGTMTSYSGALNCRAGRRC
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atggctgtcacaaaacttatcctctttgcttctgcattacttgtagcaacgctgtttatc
ggcgttaattcatccaggtcgaatgaaacatggcatgaacatgcagttgagaaaccagag
gaagtagctgccatggtggacatgagcatccgcaacagcacggagcggagacgactaggc
tacttttcctgcgccaccggcaaccccatcgacgactgctggcgctgcgaccgcaaatgg
cagctccgccgcaaacgcctcgcggactgctcgatcggattcggccgcaacgcgatcggc
ggccgcgacggccgctactacgtcgtgaccgaccccaacgacgacgatcccgtcaacccc
gtcccgggaacgctccgccacgccgtgatccaggaggagccgctctggatcgtcttcaag
cgcgacatggtcatcacgctgaagcaggagctgatcatgaacagcttcaagaccatcgac
ggacgcggcgtcaacgtccacgtggcgaacggcgcgtgcctcacgatccagtacgttact
aacattatagtccacgggatacatatacacgattgcaagcccacgggtaacgcgatggtg
agaagctccccgacgcattacgggtggaggtcgatggctgatggtgacgccatctcgatc
ttcgggtcgagtcatatatggattgatcataactcgctctcgaattgcgctgatgggctt
gtggatgccgttatgagctccactgcgattactgtctctaacaatttcttcacgcaccat
aatgaggttatgttgttggggcatagtgattcttacacgagggacaaagtgatgcaagtc
acaattgcttacaaccatttcggtgagggtcttatccagagaatgccaaggtgtaggcat
ggatacttccatgtagtaaacaacgactacacgcattgggagatgtatgcaattggtggt
agtgctggcccgactataaacagtcaggggaatcgttttcttgccccagttaacccattt
gctaaggaggtgactaagagggagtacacgggacagtcgaaatggaagcactggaactgg
agatcagaaggagatcttttcttgaacggagcatttttcacacgttctggagctggagct
ggagccggctacgccagagcttcgagtttgtcggccaagtcatcttcactcgtaggcacc
atgacctcttactctggcgctcttaactgcagagccggtcgcaggtgttaa
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