Raphanus sativus (radish): 108862329
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Entry
108862329 CDS
T06014
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108862329
03041 Spliceosome [BR:
rsz03041
]
108862329
03036 Chromosome and associated proteins [BR:
rsz03036
]
108862329
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108862329
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108862329
mRNA cycle factors
Common to processing body (P body) and stress granule
108862329
Spliceosome [BR:
rsz03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
108862329
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
108862329
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
108862329
NCBI-ProteinID:
XP_018491925
UniProt:
A0A6J0P5K7
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All DBs
Position
5:26585759..26589157
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AA seq
652 aa
AA seq
DB search
MSSSWADVSESERPPPSGWAGGGYGNSRPSYVPPHLRSRPPSSDFVSAPSTGGDRGGYGG
RGGQGYGGRGGYVGRGGGGGGWNNRTGGYDRRDTETNPFGNEGNAEPAAVNELENTGINF
EAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDL
MACAQTGSGKTAAFCFPIISGIMKEGEHVERPRGVRGVYPLAVILSPTRELACQIHDEAR
KFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVKYLALD
EADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGR
VGSSTELIVQRVEFVNDSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWL
CINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPND
IDDYVHRIGRTGRAGNSGLATAFFNDNNTSLAKPLAELMQEANQEVPDWLSRYASRASSG
GGKNRRSGGGRFGGRDFRREGGPGGGYGGGPGGGYGGGPGGGYGGGPGGGYGGYGGGPGG
GYGAMHGGYGTVPGGGYGTVYMPYGRGGAYYGGGYGTVPNQGYGPGVASAWE
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgagttcatcatgggctgatgtttctgaatcggagagaccaccaccatctggttgggct
ggaggtggttacggaaactctcgtccgtcgtatgttcctccgcatcttaggagccgtcca
ccatcttcagactttgtgtctgctccttcaactggtggtgatcgtgggggatacggtggt
agaggaggccaaggctatggtggtcgaggaggctatgttggtagaggaggaggtggtggt
ggttggaataacagaactggaggttatgaccgtagggatactgaaacgaacccgtttggt
aacgaagggaatgcagagccggcggctgttaacgagctggagaacacaggcatcaacttt
gaagcttatgaagatattcccatcgagacgagtggggataatgtgccacctcctgttaat
acatttgcggagatagatctcggagaggctctgaatcttaacatccagaggtgcaagtac
gtgaagccgactcctgtgcagcgtaatgcgatccctattttggctgctgggagggatttg
atggcttgtgctcagacagggtctgggaagacagctgcgttttgctttccgattattagt
gggattatgaaggagggggagcatgttgagagaccgcgtggtgttcggggagtctatcca
cttgctgttattctctcaccaactagggagttagcttgccagatacatgatgaagccaga
aagttctcatatcagactggtgtgaaagttgtggttgcttatggaggaacaccagtcaac
caacagataagggagcttgaaaggggagttgatattcttgttgcaacacccgggaggtta
aatgatttgcttgagagaggtagagtctcactacagatggtaaaatacttggcacttgat
gaggcggacaggatgctggacatgggtttcgaaccacaaatcaggaagattgttcagcag
atggacatgcctcctcccggtgtccggcagacgatgttgttcagtgctacatttcctaga
gagatacagagacttgcatctgattttctttcaaattacatatttctggctgttggaaga
gtgggatcaagtacggagttgattgtccaaagagtagagtttgtcaatgattctgataaa
agaagtcatctgatggaccttcttcatgctcagagggagaatggtaaccaaggaaagcaa
gctttgactctagtatttgtggagacaaagaagggagctgactcgttggagaattggttg
tgcatcaatgggttcccagctacaaccattcacggtgataggtcacaacaggaaagagaa
gtggcgctgagatcattcaagactggaaggacacctattctggttgcaaccgacgtggct
gcacgtgggcttgacattccacacgttgctcatgtggttaactttgatctaccaaacgac
atcgacgactatgtccaccgtattggacgaacaggacgtgcaggcaattcaggactagca
actgctttcttcaacgacaacaatacatcattggccaaaccactcgctgaactaatgcaa
gaagcaaaccaggaggtccctgactggctgagtcggtatgcatctcgtgcttcatctgga
ggtggtaaaaaccggcggtctggtggtggccggtttggaggccgtgacttcaggagagaa
ggtggtcctggtggtggctatggaggcggtcctggtggtggctatggaggcggtcccggt
ggtggctatggagggggtcccggtggaggctacggaggctacggagggggtcccggtggt
ggctatggagcaatgcatggtggatatggaactgtaccaggtggtggatatggaacggtt
tatatgccttatggtagaggaggtgcttactatggtggaggatatggaactgttcctaac
caagggtatggccctggagtggctagtgcttgggaataa
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