Raphanus sativus (radish): 108862363 Help Entry 108862363         CDS       T06014                                  Name (RefSeq) pre-mRNA-splicing factor prp12   KO K12830   splicing factor 3B subunit 3 Organism rsz  Raphanus sativus (radish) Pathway rsz03040   Spliceosome Brite KEGG Orthology (KO) [BR:rsz00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     108862363  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:rsz03021]     108862363    03041 Spliceosome [BR:rsz03041]     108862363    03036 Chromosome and associated proteins [BR:rsz03036]     108862363 Transcription machinery [BR:rsz03021]  Eukaryotic type   RNA polymerase II system    Coactivators     SAGA/TFTC/STAGA complex      108862363 Spliceosome [BR:rsz03041]  Complex A   U2 snRNP components    U2 snRNP specific factors     108862363  Complex B     108862363  Complex C    U2 SnRNP specific factors     108862363 Chromosome and associated proteins [BR:rsz03036]  Eukaryotic type   Histone modification proteins    HAT complexes     STAGA complex      108862363     TFTC complex      108862363 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Beta-prop_RSE1_2nd Beta-prop_RSE1_1st CPSF_A Motif Other DBs NCBI-GeneID:  108862363 NCBI-ProteinID:  XP_018491968 UniProt:  A0A6J0P7G2 LinkDB All DBs Position 4:complement(38577000..38583803) Genome browser AA seq 1353 aa AA seqDB search MMAAPEDESSAQSQSSSATAAPTPPLPPSSSAGDHYLAKCVLPPSVVLQVAYGYFRSPSS REVVFGKETCLELVVIGEDGIVESVCEQNVFGTIKDLAVIPRSKMGKDLLAVLSDSGKLS FLSFSNEMHRFSPIQHVQLSSPGNSRTQLGRMLTVDSSGLFLAVSAYHDRFALFSLSTSS MADIIHERIFYPSEDGGKTSSVEELSGTIWSMCFISKGFTESKGYDPVLAIVLNRKGSLL NELVLFGWNIKEESICLISEYVEAGALAHSIVEVPHSSGFAFLFRIGDALLMDLRDPQNP CCLVRTSLDLVPASLVEEHFVEESCRVQDGDDEGLSNVAASALLKLSDWDPMFIDTESDT GKLSSKHVSSWTWEPDHNYNPRMIVCLDDGEFFVFELIYEDDGVKINISECLYKGLPCKE ILWVEGGFLATFAEMADGTVFKLGKEKLHWMSSIQNIAPILDFSVVDDQNEKRDQMFACC GVTPEGSLRIIRSGVNVEKLLKTAPVYQGITGTWTVKIKLHDVYHSFLVLSFVEETRVLS VGLSFKDVTDSVGFQPDVCTLACGLVADGLLVQIHQDAVRLCMPNMDSQSDGIPVSSPFV SSWFPGNVSISLGAVAENLIVVSTSNPCFLYVLGVKSVSSHCCEIYEIQRVELQFEVSCI SIPQKSIGKKRSRASALDSSCKAAIPSGMERGYTFLIGTHKPSVEVLSFSEDGGGLRVLA SGMVSLTNTMGTAIRGCIPQDVRLVLVDQIYVLSGLRNGMLLRFEWPPFSHSSGLSSQCK EEMDIVVGERDNSLPINLVLIATRRIGITPVFLVPFSDSLDSDIIALSDRPWLLHTARQS LSYTSISFQPSTHATPVCSSECPQGILFVAENCLHLVEMVHSKRLNAQKFHLGGTPRKVI YHSESKLLIVMRIDLCDAGTSDICCVDPLSGSVLSSYKLKPGETGKSMELVRVGNEQVLV VGTSLSSGPAILPSGEAESTKGRILILCLVHTQNSDSGSMTICSKDGSSSQRTSPFRDEQ LSSSSICSSPDDNSDDDIKLDEAETWHLKLSCATTWPGMVLAICPYLDHFFLASAGNAFY VCGFPNDTPDKMKRFAVGRTRFMITSLRTYLTRIVVGDCRDGVLFYSYHEDVKKLHQVFC DPAQRLVGDCFLMDANSVAVSDRTGSIAILSCKDHSDFEYSSPESNLNLNCAYHMGEVAM AIKKGGNIYKLPADDVLRSYGLNKSIDAADDTIIAGTLLGSIFVFAPISREEYELLEAVQ AKLVVHPLTAPVLGNDHKEFRGREIPYQATKILDGDMLAQFLELTNRQQESVLSTTPLPS PSTIKASSKQSPSPPLMLHQVVQLLERVHYALH NT seq 4062 nt NT seq  +upstreamnt  +downstreamnt atgatggcagctccggaggatgaatcttccgctcagtctcaatcatcttccgccactgcg gctcccactcctcctcttcctccttcctcctccgctggtgatcattacctcgctaagtgc gtcctccctcccagcgtcgtcctccaggttgcttatggctacttccgctccccttcctcc cgcgaagtcgttttcggaaaggagacctgtctagagctggtggttatcggtgaagatggg attgttgaatcggtgtgtgaacagaatgtatttggaactattaaggatttggctgttata cctcggagtaagatggggaaagaccttttggctgttctttctgattctggaaagctctct tttctctcatttagcaatgaaatgcacaggttctctcccatacaacatgttcaactttct agtccagggaactcgaggactcaacttggaagaatgctcactgtagattctagtggtctc tttcttgctgtcagtgcatatcatgatcgctttgctctattttccctctcgacatcgtct atggctgatattattcatgagaggattttttatccttctgaggatggtgggaagactagc tctgtagaagaattatctggtactatttggagcatgtgtttcatttctaaaggttttact gaatccaagggttatgatcctgttcttgccattgttttaaataggaaaggatctctcctg aatgagttggttttatttggatggaacatcaaagaagaatccatatgtttaatatcagag tatgtcgaagctggggctctcgcacatagtattgttgaagttcctcactcctctggattt gcctttctgtttagaattggtgatgctctcttaatggatcttagagatcctcaaaaccct tgctgtttggttaggacatccttagatcttgttcctgcttcattagtggaagaacatttt gttgaagagtcgtgtagagtacaagatggagacgatgagggtctttctaatgtcgctgca tctgctttgttaaagcttagcgattgggatcccatgttcatagatactgaaagcgacact ggaaagttgagttctaagcatgtctcttcatggacttgggaaccggatcataactataat ccccggatgattgtttgcttagatgacggtgaatttttcgtgtttgaactcatatatgaa gatgatggtgttaagattaatatatcagagtgtttgtacaaaggtttaccgtgcaaagaa attttatgggtggaaggtggattcttggccacgtttgccgaaatggcggatgggacggtt ttcaaattgggaaaagagaagctacattggatgagttccattcaaaacattgctccgatc ttggatttctcggttgtggatgaccagaatgagaaacgagaccaaatgtttgcttgctgt ggtgtaactcctgaaggctctttaagaatcattcgtagtggcgttaatgtagaaaaactt ctgaaaaccgctcctgtttatcaaggaataactggtacctggactgttaaaataaagctt catgatgtgtaccattcgtttcttgttctgtcttttgttgaggagaccagggttttatct gtgggattaagttttaaagatgtcactgactcagttggtttccagcctgatgtctgcacc ttggcatgtgggcttgttgccgatggtttattggtacagattcaccaagatgcagtaagg ctatgcatgcccaacatggattctcagtctgatggtattccggtttcttcaccatttgtc tcctcttggtttccaggaaacgtcagtatcagcttgggggcagttgctgaaaatctaata gttgtgtctacgtctaacccctgtttcctgtatgttcttggggtcaaatcagtatcatct cactgctgcgaaatctacgaaattcaacgggtggagttgcagttcgaggtttcctgcatc tcaattcctcaaaaatctattgggaagaagagatcccgcgcttctgccctggatagtagc tgcaaagctgcgatcccttctggtatggagcgaggctatacgtttttgattggcacacat aagccttctgttgaggtcctctccttctcagaagatggtggtggtcttagagtccttgcc tctgggatggtatcgctaacaaatacaatgggaactgctattcgtggatgtatccctcag gatgtaagactcgtgttagttgatcaaatctatgttctttccgggttaagaaatgggatg ctgcttcgttttgagtggcctcccttctcacattcatccgggttgagtagtcaatgtaaa gaagagatggacattgttgtgggtgaaagagacaattcactacccatcaaccttgtgtta attgccactcgacgtatcggcatcacacctgtttttctggttccgttcagtgattcacta gattcagatatcatagctcttagtgacaggccatggttgttacacacagctcgacaaagc ctttcctacacttccatctctttccaaccttctactcatgcaactcctgtttgctcatct gaatgccctcaagggattctttttgttgcagagaactgtttacacctggtggagatggtg catagcaaacggctcaatgcgcaaaagtttcaccttggaggcactccgagaaaggttatc taccatagtgaaagcaaactgttgattgtgatgaggattgatttgtgtgatgcgggtacg tctgatatatgctgcgtggacccgctcagtggatcagtgttgtcatcttacaagctcaaa cccggagaaactggaaagtcgatggagcttgtacgtgtgggaaatgagcaagtccttgtg gttgggacgagtttgtcatctggtcctgctatactacccagtggcgaagctgaaagtaca aaaggacgaatactcattctctgcttagtacacactcaaaactcggatagtggttcaatg acaatctgttcaaaagatggttcatcttcccaacgtacatcaccttttcgtgatgaacag ctatcaagcagtagtatctgcagcagtccagatgataacagcgatgatgatatcaaactt gacgaagctgaaacatggcatttgaaattatcatgcgcaaccacttggccgggtatggta cttgcgatctgtccgtaccttgatcatttcttcctggcgtctgctggcaatgctttttat gtatgtggtttcccgaacgatactcctgataaaatgaagaggtttgctgtgggaaggact cgtttcatgataacatctctgcgcacatacttgactagaattgtcgttggggattgccgt gatggtgttctattttactcttatcatgaggatgtgaagaaacttcaccaagtattttgt gatccagcgcagcggttagttggtgattgctttctaatggatgccaattctgttgcagta tctgaccgcacggggagtatagctatcctgtcttgcaaagaccattcagactttgagtat tcaagtccggagtccaacctaaatctaaattgcgcttatcacatgggtgaggttgccatg gctatcaaaaagggtggcaacatttacaaacttccagcagatgatgtgctgcgaagttat ggtcttaataaaagcattgacgcagctgatgacactatcatagctggcacactattagga agtatattcgtctttgctcctatttcaagggaggaatatgagctcctagaagccgtccaa gcaaagcttgtggtccatccgttgactgctcctgttcttggtaatgatcacaaggagttc cgaggtcgagagattccttaccaagcgacaaagattttggatggtgacatgcttgctcag ttcttggagcttacaaatagacagcaggagtcagttttatcgacaacgcctctgccctca ccaagcacaataaaagcaagttcaaaacaatctccttctccgcctctcatgctacaccaa gttgtacaattgctggagcgtgtccattacgctctgcactag

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