Raphanus sativus (radish): 108862549
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Entry
108862549 CDS
T06014
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
108862549
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsz03400
]
108862549
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
108862549
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
DUF2987
ApoL
Motif
Other DBs
NCBI-GeneID:
108862549
NCBI-ProteinID:
XP_018492213
UniProt:
A0A6J0P853
LinkDB
All DBs
Position
Unknown
AA seq
931 aa
AA seq
DB search
MEGNFDEPNKLPELKLDAKQAQGFLSFFKTLPNDSRAVRFFDRKDYYTAHGENSVFIAQT
YYHTTTALRQIGSGANALSSVSISKNMFETIVRDLLLERNDHTVELYEGSGSNWRLVKAG
SPGNIGSFEDVLFANNEMQDTPVVVSLFPSFQEGRCVVGMAYADLTRRVLGLAEFIDDSR
FTNLESSLVAIGAKECIFPAESGKTNECKSLRESLERCGVMTTERSRQEFKGRDLESDLK
RLVKGNIEPVRDLISGFELATPALGALLSFSELLSDEGNYGNFAIRRYDIGGFMRLDSAA
MRALNVMESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLVDLNEITMRLDIVQCF
VEEAGLRQDLRQHLKRISDVERLVRSLERRRGGLQHVIKLYQSAIRLPFIKTSLHQYTGE
FSSLISKRYVKRLEALSDADHLGKFIDLVEYSVDLDQLENGEYMISSSYDTTLSSLKDQK
VSLEQQIHELHKKTAIELDLPVDKALKLDKAAQFGHVFRITKKEEPKIRKKLTTQFMVLE
TRKDGVKFTNTKLKKLGDQYQSVVDDYKSCQKELVDRVVQIVASFSEVFEELAGMLSEMD
VLLSFADLAASCPTPYCRPEITSSDVGNIVLEGSRHPCVEAQDWVNFIPNDCRLVRGESW
FQIITGPNMGGKSTFIRQVGVTVLMAQVGSFVPCDKASVSIRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVQVKKAPTLFATH
FHELTALAQANSEVAGNTVGVANFHVSAHIDTESRKLTMLYKVEPGACDQSFGIHVAEFA
NFPESVVALAREKAAELEDFSPREESGKRKSREDDPEEISRGTARAHKFLKEFAEIPVDK
MELKDSLKRLCELKDELEKDAVDCHWLKQVL
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atggagggtaacttcgacgagccgaacaagcttccggagcttaaactcgatgctaagcag
gcgcaagggtttctctccttcttcaaaaccctaccaaatgactcgagagctgttaggttc
tttgatcgcaaggattattatacagctcatggagagaactcagttttcatcgcacagact
tattaccacacaaccactgctctacgtcagattgggagtggagcaaacgctctttcgagc
gtcagcatcagtaagaacatgttcgaaacgatcgttagggatcttctcctggagcggaat
gatcataccgtggagctttacgaaggaagcgggtcgaattggaggcttgtgaaagcaggt
tctcctggaaacattgggagctttgaagatgttctgtttgcgaacaacgagatgcaggac
acgcctgttgttgtctccttgtttccgagttttcaggaggggagatgcgttgttgggatg
gcttatgctgatctcaccaggcgggttcttggactagctgagtttattgatgatagtcgt
ttcactaacctggagtcttctctcgttgctataggtgcaaaagagtgcatctttccagct
gagtctggcaaaactaatgagtgcaaaagtttgcgtgagtctctggagaggtgtggtgtg
atgacaacagagagaagtcgtcaggagtttaaaggaagagacttagaatcagatctaaag
agattggtgaaggggaatattgaacctgttagagatttgatctctgggtttgagcttgcc
acccctgctctaggtgcattactctcgttctctgaacttctttccgacgagggtaactat
gggaacttcgcaatacgcagatatgatatcggcggattcatgagactcgactctgcagct
atgagggcgttgaatgtgatggagagcaaaactgatgcaaacaagaacttcagtttgttt
ggtctcatgaacagaacatgtaccgcagggatggggaagagactgcttcatatgtggctc
aagcaacctcttgtggatttgaatgagattacgatgagactagatatagttcagtgcttt
gttgaagaagctgggttaaggcaagatcttagacagcatctgaagcgtatctcagatgtt
gagaggcttgtccggagtctcgagagaagaagaggcggtttacagcacgttatcaaactc
tatcagtcagctataaggcttcccttcatcaaaacatcactgcatcagtacactggagaa
ttctcatcactcatcagcaagagatacgtgaaaaggcttgaggctttatcagacgcagat
cacctcggcaagttcattgatctggtagagtactctgtagatcttgaccagctagagaac
ggagagtacatgatctcctcaagctacgacaccacgttatcatctctcaaagatcagaaa
gtgtcgctggagcagcagatacacgaactgcacaaaaagacagctatagaactcgatctt
ccggtggacaaggccttgaaacttgacaaagcagcgcaattcggacatgtgttcaggatc
acgaagaaggaagagccgaagatcaggaagaagctgacgacacagttcatggtgctggag
actcgcaaagacggagtgaagttcacaaacacaaagcttaagaaacttggggaccagtac
caaagtgttgtggacgattataaaagctgtcaaaaggagctggttgatcgtgtagttcag
attgttgccagcttctccgaggtgtttgaggagctagccgggatgctctctgagatggat
gttttgctaagctttgctgatttggctgccagttgccctacaccatactgtagaccagaa
atcacctcttcggatgttggaaacattgtactagaaggaagcagacatccgtgcgtagaa
gctcaagattgggtgaactttataccaaatgactgtagacttgtgagaggagagagttgg
tttcaaataataacgggacctaacatgggagggaagtccactttcattcgccaggtcggt
gtgactgtactgatggctcaagttggttcctttgttccttgcgataaagcttcagtttcc
atcagagactgtatctttgcacgtgtaggagcaggcgattgccaactgcgtggagtgtct
acttttatgcaagaaatgctagaaacagcgtcgatattaaaaggagctactgataagtca
ctgataatcatcgatgaactgggccgtggaacatcaacatatgatggttttggtttagca
tgggctatatgtgagcatctggttcaagtgaagaaagctcctactctgtttgctacccac
ttccatgaacttactgccttggctcaagcaaactctgaggttgcaggtaacaccgttggt
gttgcaaacttccatgtcagcgcacatattgacacagaaagccgcaaactcaccatgctt
tacaaggttgaaccaggggcatgtgaccagagctttgggatccatgtggctgagtttgcc
aacttccctgaaagcgtagtggcgctcgcaagggagaaagctgcagaactggaagatttc
tcccccagagaggagagtgggaagagaaagagcagagaagatgatccagaggaaatatca
agagggacagcccgagctcacaagtttctgaaagaatttgcagagataccagttgataaa
atggagctaaaagattcacttaaacgcctatgcgagttgaaagatgagttagagaaagat
gctgtggactgccactggctaaagcaggtcctctga
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