Raphanus sativus (radish): 108862675
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Entry
108862675 CDS
T06014
Name
(RefSeq) probable pectate lyase 22
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108862675
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108862675
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
108862675
NCBI-ProteinID:
XP_018492385
UniProt:
A0A6J0P6W7
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Position
5:33483181..33485313
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AA seq
412 aa
AA seq
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MLNSSQASFALIFLCCISFFLSTLALSSPVSNPELVVEEVHRKINESISRRSLGYFSCET
GNPIDDCWRCDKDWEKNRKRLADCGIGFGKNAIGGRDGEIYVVTDPGNDDPVNPKPGTLR
YAVIQDAPLWIIFNRDMTIQLKEELIMNSFKTLDGRGASVHISGGPCITIQYVTNIIIHG
LHIHDCKQGGNTYVRDSPEHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIRG
STAITISNNYLTHHNKVMLLGHSDTYEQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVV
NNDYTHWEMYAIGGSANPTINSQGNRFLAPDNSFSKEVTKHEDAPESEWSHWNWRSEGDL
MLNGAFFTLSGAGPTKSSSYSRASSLAARPSSNVGEITISSGALSCKKGSHC
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgctgaattcctcacaagcatcctttgctcttatctttctctgctgcatttcctttttc
ttgtctacactcgctttgtcctcgcctgtttccaaccctgagctcgtagttgaggaagtc
cacaggaaaataaacgagtccatatcacgaaggagcttaggatacttctcgtgtgagacc
ggtaatccaatcgacgattgttggcgatgcgacaaagactgggagaaaaaccggaaacgg
ttagctgattgtggaatcggttttggaaaaaacgcaattggtggtcgcgatggtgaaatt
tacgtggtcaccgatccaggaaatgatgatccagtaaaccctaaaccgggaacactaaga
tacgcagtaattcaagatgcaccgctctggattatattcaaccgagacatgacgatccaa
ctaaaagaagaactcataatgaactctttcaaaactctagacggacgaggagcatcagta
cacatctccggtgggccgtgtataaccatacaatacgtgacaaacatcatcatccatggt
ttacacatacatgactgtaagcaaggtgggaacacttacgttcgagattctccagagcac
tacgggtggcggacgatatcggacggtgacggtgtttcgatcttcggtgggagccacgtg
tgggttgatcattgctcgctctcgaattgtaacgatgggttgattgatgcaatccgtgga
tcgacggctataacgatttctaataattacttgacgcatcacaataaggttatgttattg
ggacatagtgatacgtacgagcaagacaagaatatgcaagtcactatcgcttttaaccac
tttggagaaggccttgtccaaagaatgccaaggtgtcgacatggatatttccatgtggtg
aacaatgactatacacattgggaaatgtatgcaattggaggaagtgctaatcctaccatc
aactcccaaggcaaccgtttccttgctcctgataactcttttagcaaagaggtaacaaag
catgaggatgcgccagaaagcgaatggagtcattggaattggagatccgaaggagatcta
atgcttaatggtgcattctttacactttctggagctggaccaactaaatcgtcaagctat
tcgagagcctcaagcctagctgctagaccgtcctctaatgttggtgagataactatatct
tctggtgcgctcagctgcaaaaagggttcccactgctga
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