KEGG   Raphanus sativus (radish): 108862749
Entry
108862749         CDS       T06014                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A isoform X1
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03030  DNA replication
rsz03410  Base excision repair
rsz03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    108862749
   03410 Base excision repair
    108862749
   03420 Nucleotide excision repair
    108862749
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rsz03032]
    108862749
   03400 DNA repair and recombination proteins [BR:rsz03400]
    108862749
Enzymes [BR:rsz01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     108862749
DNA replication proteins [BR:rsz03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    108862749
DNA repair and recombination proteins [BR:rsz03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      108862749
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 DNA_pol_B zf-DPOE zf_DPOE_2 DNA_pol_B_exo2 RNase_H_2
Other DBs
NCBI-GeneID: 108862749
NCBI-ProteinID: XP_018492489
UniProt: A0A6J0P6X8
LinkDB
Position
1:complement(3341834..3357624)
AA seq 2180 aa
MSGDNRRWDRKDSRRSNTQKVVKTAEDELESKLGFGLFSEGETRLGWLLTFASSSWEDPD
TGKTYSCVDLYFVTQDGFYFKTKYKFRPYFYAATKDKMELEVEAYLRRRYERQVADIEIV
EKEDLDLKNHLSGLRKKYLKVSFDTVQQLMEVKRDLSHVVERNQAKFDALEAYESILAGK
REQRLQDCLDSLVDLREYDVPYHVRFAVDKDVRSGQWYNVSISSTDVTLEKRTDILQRAE
VRVCAFDIETTKLELKFPDAEYDQIMMISYMVDGQGFLIVNRECVGEDIEDLEYTPKPEF
EGYFKVTNVSNEVELLRKWFSHMQEVKPGIYVTYNGDFFDWPFIERRAAHHEIKMNEELG
FRCDQNQGECRAKFVCHLDCFAWVKRDSYLPQGSHGLKAVTKAKLGYDPLEVNPEDMVQF
AMEKPQTMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMVPDEVLRKGSGTLCEMLLMV
EAYKANVVCPNKNQADPEKFYQSHLLESETYIGGHVECLESGVFRSDIPTSFKLDTSAYQ
QLIDNLDRDLEYAITVEGKMRMDSVSNYDEVKEKIKEKLEKLRDCPIREEGPLIYHLDVA
AMYPNIILTNRLQPPSIVTNEICTACDFNRPGKTCLRKLEWVWRGVTFMAKKSDYYHLKK
QIESEFVDAGANIQSSKSFLDLPKVEQQSKLKERLKKYCQKAYRRVLDKPITEVREAGIC
MRENPFYVDTVRSFRDRRYEYKTLNKVWKGKLSEAKASGNSIKIQEAQDMVVVYDSLQLA
HKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIERIGRPLELDTDGIWCC
LPGSFPENFTFKTIDMKKLTISYPCVMLNVDVAKNNTNDQYQTLVDPVRKTYESHSECSI
EFEVDGPYKAMIIPASKEEGILLKKRYAVFNHDGTLAELKGFEIKRRGELKLIKVFQAEL
FDKFLHGSTLEECYSAVAAVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGEQ
KSCAVTTAKRLADFLGDTMVKDKGLRCQYIVACEPKGSPVSERAVPVAIFTLSKTEPERM
KFYLGKWCKQRLSSDHKVDIRLIIDWSYYKQRLNSAIQKVITIPAAMQKVANPVPRVLHP
DWLHKKVREKDDKFRQRKLADMFSSANIDGVFDKNHSVAQDDVNDIEDFCKENKPGVKEP
KPIARSYEVNKEQVGREQQESKDPKCDDDISFENIDKNVDYQGWLEVRKRKWKGIMEKKK
KRRLGDQRSLKQIDAHEIKKKVSQVRRGVGSFFRRPEEALTSSHWQIIQLVPSPQSGQFF
AWVVVEGLMLKIPLTIPRVFYINSKAPIDGKFPGKCVNKILPHGRPCYNMIEVEIQEEQF
RKESKKLAALLADPEIEGIYETKVPLEFSAICQIGCVCKIDNTAKHRNTQDGWKVGELHM
KTTTECRYLERSIPLLYLYNSTSTLRAIYVLYCHASKLMSAVVVNPYGDKELLPSALERQ
FRDGCQELSLESLSWDGIVFQVDYVDHAEAAEKIIQKAISEYREENSGPTVAVIECPDFN
SIKESIKALDDFPCVRIPFNGDDNSYQPVSWQRPAAKLAVFRCAAAFQWLDRRISQSRYA
HVPLGNFGLDWLTFTIDIFLSRALRDQQQVLWVSDNGVPDLGGLSNEETFFADEVQQTSL
VYPGAYRKVSVELKIHHLAVNALLKSNLVSEMEGGDFLGFEQDGNSRGSSSNVNASFDET
TGCAPAFRVLKQLIHSCLTDVCKSRNIYADSILQRLSWWLCSPCSKLHDPALHLMLHKVM
QKVFALLLTDLRRLGATIIFADFSKIVIDTGKFDLSAANAYCDSLITAVGNSDIFEWISL
EPVHYWHSLLFMDQYNYAGIRATDDEISPDEVTIEPKWSVARLFPEYIQRDFIIIVAKFI
FDPWKFALEKKRGSSESLEAQMVEYLKKQIPSSYMDMLVTKINDITSHMKEIDFSDTSRD
SSQAPKRDYTLEFVQTICAVMALDQNVEQDVLVLKRNLLKYINVKEFAAEAEFLDPGPSF
ILPNVACSNCDAYRDLDIGRDPALLTEKEWCCVDSQCGKIYDREQMENSLLQMVRQRERM
YHMQDLVCTRCNQVKAAHLTEQCECSGSFRCKESGSEFRKRMEIFLDIAKRQKFQLLEEC
TSWIIDPTGSWQTNTGRHHS
NT seq 6543 nt   +upstreamnt  +downstreamnt
atgagcggagataatcgaagatgggatcgaaaggactcgcggagatcgaacacgcagaag
gtcgtaaaaacggcggaagatgaactcgaatctaaactcggatttgggcttttctccgaa
ggtgaaacgcgcctcgggtggctactcacattcgcatcatcatcttgggaagatcctgat
actgggaaaacttatagctgtgtggacctttacttcgttactcaggacgggttttatttc
aagacaaaatacaagttccgcccttacttctatgcagcgacgaaagataaaatggaattg
gaagttgaagcctacttaagacgccgatatgaaagacaagttgctgatattgagattgtt
gaaaaagaggatcttgatcttaaaaatcatctatctggcctgcgaaagaaatacctaaaa
gtatcatttgatactgtgcaacaattaatggaagtcaagagggatctatcgcatgttgtc
gaacgaaaccaggcaaaatttgacgcacttgaagcatacgaatccattttggctggaaaa
cgagaacaacgtcttcaagattgcttagactctttagtggacctccgcgagtacgatgtt
ccttatcatgttcgatttgcagttgataaagatgtgcggagtgggcaatggtacaatgtc
agtatttccagcactgatgtcacactagagaagaggacagatattctccagcgcgcagaa
gtccgtgtttgtgcattcgatatagagacaacaaagcttgagttgaagtttccggatgct
gaatatgatcaaattatgatgatatcttacatggtcgatgggcaaggttttctaattgtt
aacagagagtgtgttggcgaagacatagaagatctggagtatacacccaaaccagagttt
gaaggatatttcaaagtcactaacgttagcaacgaggttgaactccttcgaaaatggttt
tcccatatgcaagaggttaaacccggtatttatgttacatataacggcgactttttcgac
tggccatttatagaacggagagcagcccatcatgagatcaaaatgaatgaggagttggga
ttccgttgtgatcagaatcaaggtgaatgtcgagctaaattcgtttgccatttagattgt
tttgcttgggtgaaacgagatagctatcttcctcagggaagccatggtctgaaggctgtt
acaaaggctaaactggggtatgatccactggaagtgaacccagaagacatggttcagttt
gccatggaaaaaccacagacaatggcctcctattcggtctctgatgctgttgcaacttat
tacctatacatgacatatgttcatccgttcattttctctctcgcaactatcattccaatg
gtccctgatgaggtcttacgtaaaggaagtggaaccctttgtgaaatgcttctgatggtc
gaggcgtataaggcaaatgttgtatgtcccaataaaaaccaagctgaccctgagaagttc
taccaaagtcaccttcttgaaagtgagacatatattgggggccatgtagagtgcctcgaa
agtggtgttttccgttctgacattccaaccagttttaagctagacacatcagcataccag
caactgatcgataaccttgaccgggatctggagtatgctatcactgtagaagggaaaatg
agaatggattccgtttccaactatgatgaagtgaaggaaaaaatcaaggaaaagctggag
aagttacgagattgccctatacgtgaagagggacctcttatttatcaccttgatgttgca
gcgatgtatccaaatatcatcttaacaaataggcttcagccaccatcaatagttacgaat
gaaatttgcaccgcatgtgatttcaaccgcccgggaaaaacgtgtcttcgaaaacttgaa
tgggtttggcgtggggtgacattcatggcaaagaaaagtgattattaccatttgaagaag
cagattgagtccgaatttgttgatgctggtgcaaatattcagtcttcaaaatcattcctt
gatctaccaaaggtggaacaacaatctaaactaaaagaaagactgaaaaaatattgtcaa
aaggcatatcgacgagtacttgacaagccaatcactgaagttcgtgaggctgggatatgc
atgagagaaaacccgttttatgtagacactgttcgaagctttcgagataggagatatgaa
tacaaaacacttaacaaggtctggaagggaaagttgtcagaggccaaggcaagtggcaat
tcaatcaagatccaggaagcacaggacatggtagtggtttacgattccttgcagctagct
cataagtgtattcttaattccttctatggatatgtcatgcgaaagggtgcaagatggtac
tctatggaaatggctggtgtagttacctatactggagccaaaatcatccagaatgcccgt
ttgcttattgagcgtattgggagaccacttgagctggatacagatggtatatggtgttgt
cttcctggatcttttcctgagaactttacttttaagacaatagacatgaagaaattaacg
atctcttatccgtgtgtaatgcttaatgttgacgtggctaaaaataatacaaatgatcaa
tatcagactcttgtagatcctgtacgcaagacgtatgagtcgcatagtgaatgctccatt
gaattcgaagtggatggaccgtacaaggcaatgataattccggcatcgaaagaagaagga
atcttacttaagaagcggtatgctgttttcaatcatgacggaaccttagcagaactcaag
ggatttgagatcaagcgtcgaggggagctgaagctcattaaagttttccaggccgaactt
tttgacaaatttctccatgggtcaactcttgaagagtgttattctgctgttgcagccgtt
gcaaatcggtggcttgacctgctcgataatcaaggaaaagatattgccgacagtgaacta
ctagattatatatcagaatcaagcaccatgagcaaatccttagcagattatggtgagcaa
aagtcatgtgcagtgaccacagcaaaacgcctggctgattttcttggtgatacaatggtc
aaagataaaggactgcgttgccaatacattgttgcttgtgaaccaaagggttcacctgta
agtgaacgtgctgtccctgttgccatatttaccttatctaagacggaacctgaaagaatg
aaattttatctgggaaaatggtgcaagcagcgccttagttcagaccataaagttgatatt
cgtttaattattgactggtcgtattacaagcagcgtcttaattcagctatccaaaaagtt
atcaccattcccgctgcaatgcagaaggtggcaaatcccgtgcctagggtgcttcatcct
gattggcttcataaaaaagtccgtgagaaagatgataaatttcgccagagaaaactagct
gatatgttcagctcagcaaacatagatggcgtgtttgacaaaaatcattcggtggctcaa
gatgatgtgaacgatattgaggatttttgcaaagaaaacaagcctggcgtaaaggagcca
aagccaattgcacgttcttatgaagttaataaagaacaggttggacgtgagcagcaagag
agcaaggatccaaagtgcgatgacgatatttcatttgagaacattgacaagaacgtggat
taccaaggttggcttgaagtgagaaaaagaaaatggaaaggaattatggagaagaagaag
aaacgaaggttgggtgatcaacgatctttaaagcagattgatgctcatgagataaagaaa
aaagtctcacaggttagaagaggtgtaggttcattctttaggaggcctgaagaagctttg
actagctcacattggcagataatacagctggtcccaagtccacagagtggacaatttttc
gcttgggtggttgtggaaggattgatgcttaaaataccattgacgatcccaagagtgttt
tacattaattccaaagctcctatagatggaaaattcccgggaaagtgtgtcaacaagatt
cttcctcatggaaggccttgttataatatgattgaggttgaaattcaggaagaacaattt
agaaaagaaagcaagaagcttgcagctcttcttgcagaccctgaaattgagggcatatat
gaaacaaaggtgccgctggagtttagtgctatatgtcagattggatgtgtatgcaaaatt
gataacacagccaagcaccgtaacacgcaagatggatggaaagttggtgaacttcatatg
aaaactacaacggaatgccgctacttggagcgatcaattccacttctttacttgtataac
agcacctcaacactacgtgctatatatgttttatattgtcatgcatcgaagcttatgtct
gccgtggtagttaatccttatggcgacaaggagttattaccatccgccctagagagacag
tttagagatggttgccaagaattgtcactcgagtcgttgtcttgggatggtatcgttttc
caggtagactatgttgaccatgccgaagctgccgaaaagattatacaaaaagcgataagt
gaatacagagaagaaaattctggaccaactgttgcagtcattgaatgccctgactttaat
tccatcaaggagagtataaaagccctggatgatttcccatgtgtgaggattcccttcaac
ggcgatgacaatagttatcagcctgtctcctggcaacgtccggcagcaaaattagcagtg
tttcgttgtgcggcagcatttcagtggttggatcggaggatttctcagtcaagatatgcc
catgtgcctttggggaattttggactagattggttaacattcacaatagacattttcctg
tccagggcactccgtgaccaacagcaggttctttgggtgtcagataatggtgttccagac
cttggtggtctaagcaatgaagagacattctttgctgatgaggtgcaacagacaagtttg
gtatatcctggagcgtatagaaaagtttctgtggaattaaagatccatcacttggctgtt
aatgcccttctgaaaagcaacctggtgagtgagatggaaggaggtgactttttgggattt
gaacaggatgggaattccagaggaagtagttcgaatgttaacgccagttttgatgagacc
actggatgtgctccagcatttcgagtcctgaaacagttgattcacagttgcttgactgat
gtgtgtaaatcacgcaatatatatgctgattccattttgcaacgtttgtcttggtggctc
tgcagcccttgctcgaagcttcatgatccagctcttcatctcatgcttcacaaggtcatg
caaaaggtgtttgcgctgcttttgactgatttgcggagattaggtgctacaataatattt
gcagacttctcaaagatcgtcatcgacacagggaaatttgatctatctgctgctaatgct
tattgtgacagcttaatcacagctgtggggaatagcgatatctttgagtggatctcgctc
gaaccggttcactactggcactcattacttttcatggaccagtataactatgctggtatc
cgagctactgacgatgaaatttcacctgacgaagtgactattgaaccaaagtggagtgtt
gctcgacttttccctgagtatattcagagggatttcatcataattgttgccaagtttata
tttgacccctggaaattcgctttagagaaaaaaagaggcagttcagagagtttagaggca
cagatggtagaatatctaaagaaacagataccatcgagctatatggatatgcttgttaca
aaaatcaatgatatcacgtcacacatgaaggagatagacttttcagatacatctcgagat
tctagtcaagctcccaaaagagattacacgttagagttcgtacaaactatctgtgctgtt
atggctcttgaccaaaatgtcgagcaagatgttctggtactgaaaaggaatctgttaaag
tacattaacgtaaaagaatttgcggctgaagccgaatttcttgaccctgggccctccttt
atcttgcctaatgtggcttgcagcaactgtgacgcctacagagacctagatataggcaga
gacccagctctattaacagagaaagaatggtgctgcgtagattcacaatgtgggaagata
tatgacagagagcagatggagaatagtcttctccagatggtgagacagagagaaagaatg
taccacatgcaggatctagtttgcacgaggtgcaatcaggtgaaagcggctcatttgaca
gagcagtgtgagtgttctggatcctttagatgcaaggagagcgggtctgagttccgcaag
aggatggagattttcttggatatagcaaagcgccagaagtttcaactgttggaagaatgc
acatcttggattatagatcccaccggaagctggcaaaccaataccggaagacatcattca
tag

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