Raphanus sativus (radish): 108862763
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Entry
108862763 CDS
T06014
Name
(RefSeq) probable pectate lyase 13
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108862763
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108862763
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
108862763
NCBI-ProteinID:
XP_056842645
UniProt:
A0A9W3BTJ5
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Position
5:24861983..24865769
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AA seq
484 aa
AA seq
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MLLPRFSTTIILLCLFLFTLLEATNLTLPHQHPSPDSVALHVLSTINASLSRRQLSSSSS
SSCRTGNPIDDCWRCTSSDWSSNRQRLADCSIGFGRGTLGGKNGKIYVVTDSSDSNPSNP
SPGTLRHAVIQEEPLWIVFSSNMLIRLKHELIINSYKTIDGRGSAVHITGNGCLTVQYVQ
HVIIHNVHIYDCKPSGGAVIAATPTKSGRRGRSDGDGISIFGSQKIWIDHCSMSHCTDGL
IDAVMGSTAITISNNYFAHHDEVMLLGHDDSYGPDTGMQVTIAFNHFGQGLVQRMPRCRR
GYIHVVNNDFTSWKMYAIGGSGNPTINSQGNRYIAPSDPSAKEVTKRVDSKDDGEWSNWN
WRTEGDLMENGAFFVASGGGVSALYSKASSVEPKASALVDQLTRNAGVFGGPRDDQGQSG
DSYSGYGGGGGGGGGGGVGGGGGGGGGGGGGEGGSSGSNGGTSAIGGTTRGSSTGSSDDN
NVFG
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgctgcttccacgcttctccaccaccattatcctcctctgcctcttcctctttacactc
ctcgaagccactaatctcactctccctcaccaacatccttcccctgactccgtcgctctc
cacgtcttaagtactatcaatgcatcactctcacggagacaactcagctcctcctcctcc
tccagttgccgcaccggaaacccaatcgacgactgctggcgctgcacctcctccgactgg
tcctccaaccgccaacgcctcgccgactgctccatcggcttcggccgtggcaccctcggc
ggcaaaaacggcaagatctacgtcgtcacagactcctccgacagcaacccatcaaaccca
tccccgggaaccctccgccacgccgtcatccaagaagagcccctctggatcgtcttctcc
tccaacatgctcatccgcctcaaacacgaactcatcatcaacagctacaaaaccatcgac
ggccgcggttccgccgtccacatcaccggcaacggctgcctgaccgtccagtacgtgcag
cacgtcatcatccacaacgtccacatctacgactgcaaaccctccggcggcgccgtcatc
gccgcgactccgacgaagtccggtcggcgaggcaggtccgacggcgacgggatctccatc
ttcgggtcccagaagatctggatcgaccactgctccatgagccactgcaccgacgggctc
atcgacgcggtgatggggtccacggcgattacgatctcgaacaactacttcgcgcaccac
gacgaggtgatgctgttgggtcatgacgatagttacggtccggacacggggatgcaggtg
acgatcgcgtttaatcatttcggacaggggcttgttcagaggatgcctaggtgtcggaga
gggtatatacatgtggtgaataatgatttcacttcgtggaagatgtatgcgattggtggt
agtggtaatcccacgattaatagtcaagggaatcgttacattgctccttctgatcctagc
gccaaagaggtgacgaagcgggtggattcaaaggacgatggagagtggtcgaattggaat
tggagaacggaaggagatctgatggagaacggagctttctttgtggcgtctggtggagga
gtgagcgcattgtactctaaagcttccagtgtggagcctaaagcttccgctcttgtagac
caactcactcgaaacgctggcgtttttggcggtcccagggatgatcaaggtcagagtggc
gattcttattctggttatggaggtggaggtggaggtggaggtggaggtggtgttggtggt
ggtggtggtggtggtggtggtggtggtggtggtgaaggcggcagcagcggcagcaatgga
ggaaccagtgctattggcggaacaacgagaggaagtagcaccggcagcagcgatgacaac
aatgtcttcggatga
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