Raphanus sativus (radish): 108862889
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Entry
108862889 CDS
T06014
Name
(RefSeq) coatomer subunit beta'-2 isoform X1
KO
K17302
coatomer subunit beta'
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rsz04131
]
108862889
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rsz04147
]
108862889
Membrane trafficking [BR:
rsz04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
108862889
Exosome [BR:
rsz04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
108862889
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
WD40_CDC20-Fz
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
NBCH_WD40
Beta-prop_HPS5
WDR90_beta-prop_4th
PEP5_VPS11_N
Beta-prop_IFT122_1st
Beta-prop_WDR35_TULP_N
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_Nup120_160
WD_LRWD1
TPR_GEMI5
Motif
Other DBs
NCBI-GeneID:
108862889
NCBI-ProteinID:
XP_056866232
UniProt:
A0A9W3DQN9
LinkDB
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Position
5:29872211..29878724
Genome browser
AA seq
909 aa
AA seq
DB search
MPLRLEIKKKLAQRSERVKCVDLHPTEPWILASLYSGTLCIWNYQTQVMAKSFEVTDLPV
RSAKFIARKQWVVAGADDMHIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDD
MLIKLWDWEKGWACTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPE
LPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYIKSSRRVVIGYDEGTIMVKLG
REIPVASMDSTGKIIWAKHNEIQTANIKSIGAGYEVTDGERLPLAVKELGTCDLYPQSLK
HNPNGRFVVVCGDGEYIIYTALAWRNRSFGSGLEFVWSSEGECAVRESSSKIKTFSKNFQ
EKKSVRPTFSAEKIFGGTLLAICSSDFICFYDWAECRLIQRIDVTVKNLYWADSGDLLAI
ASDTSFYILKYNRDLVSAHFDSGRSTEEEGVEDAFEVLHENDERVRTGLWVGDCFIYNNS
SSKLNYCVGGEVTTMYHLDRPMYLLGYLASQSRVFLVDKEFNVIGYTLLLSLIEYKTLVM
RGDLDKASEILPTIPKDQHNSVAHFLESRGMIEDALDIATDPDYRFELAIQLGRLEIAQE
IAVEVQSESKWKQLGELAMSSGKLELAEECMKYAMDLSGLLLLYSSLGDAEGVSKLATLA
REQGKNNVAFLCLFMLGKLEDCLDLLVESNRIPEAALMARSYLPSKVSEIVALWRKDLSK
INSKAAESLADPEEYSNLFDDWQVALSVEAKAAETRGVYSAAENYPSHADRSSMTLVEAF
RNLQVEEEESFENGDMDHEQEEVVAEEENGDEEKNEVVVDGDSTDGAVLVNGSEAEEEWD
TNNEGNPSA
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgcctctaagactcgagatcaagaaaaaattagctcaaaggtctgagagagtcaaatgt
gtggatctgcatcctacagaaccatggattctagcgagtttgtactctggaaccttgtgt
atttggaactaccagacacaggtgatggcaaagtctttcgaggtgaccgatttaccagtt
cggtcagccaagtttatagcacggaagcaatgggttgtggcaggagctgatgatatgcat
atccgtgtatacaattacaataccatggataaggttaaagtgtttgaggctcactctgac
tacattagatgcgttgctgttcatccaacccttccgtatgtgctgtcatcttctgatgat
atgctcattaagctctgggactgggaaaagggttgggcttgcactcagatattcgaggga
cactcgcactacgtgatgcaagtcacatttaatccaaaagacaccaacacttttgccagt
gcatcactcgatcgtaccataaagatctggaatcttggttctccagacccaaattttaca
ttggatgcccatcagaaaggagtgaactgcgtagactatttcactggtggtgacaagccc
tatttgattaccggctctgatgatcacactgctaaggtctgggactatcaaacaaagagt
tgtgtccagacccttgacgggcacacacacaatgtttctgccgtatgtttccatccagag
cttccaattataatcacaggttcggaagatggtaccgttcgaatttggcatgcaactacg
tacaggctagagaacacattaaattatggcctcgagagagtttgggccattggctacatt
aaaagttcacgccgggttgtgatcggatatgatgaaggaacaatcatggttaaacttgga
agagaaattcctgtcgctagcatggatagtaccggaaaaatcatatgggctaagcataat
gaaattcaaactgcgaacatcaaaagtatcggtgcaggttacgaggttactgatggagag
aggttgcccttggctgttaaagagctggggacttgtgatctttatccacaaagcttgaag
cacaatccgaatgggaggtttgtcgtagtctgtggagacggggagtatataatctacacg
gccttggcttggagaaataggtcatttggttctggacttgaattcgtttggtcgtctgag
ggggagtgtgcggttagagaaagctcatcaaagattaagacatttagcaaaaatttccag
gagaaaaagagtgtccgccctactttctcagctgagaagatctttgggggaaccttgtta
gctatatgttcaagtgatttcatttgcttttatgattgggctgaatgtaggctgattcaa
cgtattgacgtcactgtaaagaatctttattgggctgacagtggagatttactagctatt
gctagtgacacgtcattctacatcttgaaatacaaccgcgacttagtttccgcacatttt
gatagtggaaggtcaactgaggaagaaggtgttgaggatgcatttgaggttctccatgag
aatgatgaacgtgttaggacaggtctatgggttggtgactgtttcatttacaacaactct
tcttcaaagcttaactattgtgtcggaggcgaggtaaccacaatgtatcatttggaccgc
ccaatgtatttgttgggctatctcgcaagtcaaagtcgggtgttcctggttgacaaagaa
ttcaatgttataggatacaccttgctgctaagcctgattgagtacaagactcttgtgatg
cgaggtgatctagacaaagctagtgaaatcttacctactattcctaaagatcagcataac
agtgttgctcatttcctggagtcacggggaatgattgaagatgctctggacattgcaacc
gaccctgactacagatttgagttggccatacaactgggaagacttgaaatcgcgcaggaa
atcgctgtagaagtacagagcgagtctaagtggaagcaattaggagagttagccatgtcc
tctgggaagcttgaattggcagaggaatgcatgaagtatgcgatggatttgagtggtttg
ttactgctttattcttctctgggagatgctgaaggcgtgtcaaaacttgcaacacttgct
agagaacaagggaagaacaatgtcgcctttctttgcctgttcatgctgggtaaattggaa
gattgtttggacttattagtggagagtaaccggataccagaagctgctttgatggcaaga
tcatatcttccaagcaaagtatctgagatagtagctctgtggaggaaagatttgagcaag
attaattcaaaagcagcagaatctttggctgatcctgaggagtactcaaatctttttgat
gattggcaagttgctctttccgtcgaagcaaaagctgcagagacaaggggagtttattca
gctgccgaaaactatcctagccatgctgatagatcatccatgaccctagtggaagccttt
agaaacttgcaagttgaggaagaggaatcatttgaaaatggagacatggatcatgagcag
gaggaggtagtagcagaagaagaaaatggagatgaagaaaagaatgaagtggttgttgat
ggtgactcaaccgatggagcagtgcttgtaaacggaagtgaggctgaagaagagtgggat
acgaataatgaaggaaacccatcagcttaa
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