Raphanus sativus (radish): 108862946
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Entry
108862946 CDS
T06014
Name
(RefSeq) geranylgeranyl pyrophosphate synthase 10, mitochondrial-like isoform X1
KO
K13789
geranylgeranyl diphosphate synthase, type II [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00900
Terpenoid backbone biosynthesis
rsz01100
Metabolic pathways
rsz01110
Biosynthesis of secondary metabolites
Module
rsz_M00366
C10-C20 isoprenoid biosynthesis, plants
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
108862946
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
rsz01006
]
108862946
Enzymes [BR:
rsz01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
108862946
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
108862946
2.5.1.29 geranylgeranyl diphosphate synthase
108862946
Prenyltransferases [BR:
rsz01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
108862946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
Motif
Other DBs
NCBI-GeneID:
108862946
NCBI-ProteinID:
XP_018492721
UniProt:
A0A6J0P7T4
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All DBs
Position
5:8403809..8404883
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AA seq
355 aa
AA seq
DB search
MGNRETLAYTLIWIFLYLKSLFWRFRPRYTVVKSVFFRLAHHLNIPRLAAVTSYNFDFKL
YMVNKVASVNKALDEAVPLREPALKIRESMRYTLLSSGKRVRPMLCLAACELVGGQESTA
MPAACAVEMLHVSSLIQDDLPCMDNDDLRRGKPSNHKAFSEGIAVLTADALIALAVTKMA
ASISLGVSSERVLRAVMEMTRAVGTEGLIAGQAADIAAERIRFEENEVGLKHLEFIHIHK
TAVLLEASVVAGALVGGGSDEEIERLRKYARCIGLLFQVVDDVLDVTKSSEELGKTAGKD
LVARKLTYPSLMGVEKSNEYAKKLNVQAREHLQGFDSHKVAPLLSLADYIVNRQN
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atgggaaacagagaaactcttgcttacactctcatttggatctttctttatctcaaatcc
ttgttttggagattcaggccgcgttacactgtagttaagtctgtcttcttcagactggcc
caccaccttaacatcccccgtttagctgcagtaacaagctataacttcgacttcaagttg
tatatggtcaataaggtcgcgtctgtcaataaagcactagacgaggcggttcctctccgc
gaaccagcactcaaaatccgtgaatccatgaggtacacgcttctctccagtggaaaacgt
gtaaggccaatgctttgcttagctgcgtgcgagctcgtaggcggccaagagtccaccgca
atgcccgctgcatgtgctgttgagatgctgcacgtgtcatctctcatccaagacgatctc
ccttgtatggataacgatgaccttcgtcgtgggaaacccagcaaccataaagcctttagc
gaaggtatagccgtcttgaccgctgatgcactcatagctctggctgtcacgaagatggcc
gcgtccatctctttgggagtttcttcggagagagttctccgggccgttatggagatgaca
cgagcggtgggaacggaagggctcattgcgggtcaagcggcggatatagccgcagaaagg
attagatttgaggaaaacgaagtcgggttgaaacatctcgagtttatacatattcacaaa
acggcggtgttgcttgaagcttctgtagtggcgggagctctagtgggaggtgggtccgat
gaagagattgaaaggcttaggaagtacgcaagatgcattgggcttttgtttcaagtcgtg
gatgatgtgttggacgtgacaaagtcgtcggaggagctggggaagacggccggtaaagat
ttggtggctagaaagctaacgtatccgagtctcatgggagtggagaagtcgaatgaatat
gcgaagaagttaaacgtacaagcgagagagcatcttcaagggtttgattcacataaggtg
gcgcctttgttgtctcttgctgattacattgtcaacagacaaaactga
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